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Aliases & Descriptionsfor NUDT12 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions nudix (nucleoside diphosphate linked moiety X)-type motif 121 2 OTTHUMP000002226552 Nudix motif 122 3 peroxisomal NADH pyrophosphatase NUDT122 Nucleoside diphosphate-linked moiety X motif 122 3 nucleoside diphosphate linked moiety X-type motif 122 DKFZP761I1721 EC 3.6.1.223 DKFZp761I1722
Export aliases for NUDT12 gene to outside databases Previous GC identifers: GC05M102544 GC05M103315 GC05M102915 GC05M102960 GC05M102912
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Summariesfor NUDT12 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for NUDT12 : Nucleotides are involved in numerous biochemical reactions and pathways within the cell as substrates, cofactors, and effectors. Nudix hydrolases, such as NUDT12, regulate the concentrations of individual nucleotides and of nucleotide ratios in response to changing circumstances (Abdelraheim et al., 2003 (PubMed 12790796)).(supplied by OMIM) UniProtKB/Swiss-Prot: NUD12_HUMAN, Q9BQG2 Function : Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towardsNAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle Gene Wiki entry for NUDT12
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Genomic Viewsfor NUDT12 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NUDT12 gene promoter: LCR-F1 PPAR-gamma1 PPAR-gamma2 Elk-1 TBP TFIID SRF FOXO3b FOXO3a HNF-4alpha2 Other transcription factors Search SABiosciences Chromatin IP Primers for NUDT12 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q21.2 Ensembl cytogenetic band: 5q21.2 HGNC cytogenetic band: 5q15 NUDT12 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M098066: view genomic region
(about GC identifiers )
Start:
98,066,154 bp from pter
End:
98,080,094 bp from pter
Size:
13,941 bases
Orientation:
minus strand
1 alternative location : Chr 5- 102,884,556-102,898,494
RefSeq DNA sequence: NC_000005.9 NT_034772.6
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Proteinsfor NUDT12 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: NUD12_HUMAN, Q9BQG2 (See
protein sequence )Recommended Name: Peroxisomal NADH pyrophosphatase NUDT12 Size : 462 amino acids; 52076 Da
Cofactor : Magnesium or manganese (By similarity)
Subcellular location : Peroxisome
Secondary accessions : B3KUW2 Q8TAL7Explore the universe of human proteins at neXtProt for NUDT12: NX_Q9BQG2 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_113626.1 ENSEMBL proteins: ENSP00000230792 ENSP00000424521 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
NUDT12 for ontologies About GeneDecksing Antibodies for NUDT12: Assays for NUDT12:
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Protein
Domains/ Familiesfor NUDT12 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NUDT12 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry Q9BQG2 ProtoNet protein and cluster: Q9BQG2
2 Blocks protein families : IPB000086 NUDIX hydrolase IPB002110 Ankyrin repeat signature UniProtKB/Swiss-Prot: NUD12_HUMAN, Q9BQG2 Similarity : Belongs to the Nudix hydrolase family. NudC subfamilySimilarity : Contains 3 ANK repeatsSimilarity : Contains 1 nudix hydrolase domain
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Gene Functionfor NUDT12 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: NUD12_HUMAN, Q9BQG2 Function : Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towardsNAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle Catalytic activity : NAD(+) + H(2)O = AMP + NMNBiophysicochemical properties : Kinetic parameters: KM=11 uM for NADH; KM=16 uM for NADPH; KM=190 uM for NAD; pHdependence: Optimum pH is 8-9; Enzyme Number (IUBMB): EC 3.6.1.22
4 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
NUDT12 for ontologies About GeneDecksing Animal Models: 1 MGI phenotypic allele for Nudt12 (no phenotypes)
NUDT12 for phenotypes About GeneDecksing
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Pathways & Interactionsfor NUDT12 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
NUDT12 for pathways About GeneDecksing 1 Millipore Pathway for NUDT12 2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for NUDT12 2 Kegg Pathways (Kegg details for NUDT12) : SABiosciences Custom Pathway-Focused PCR Arrays for NUDT12 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for NUDT12 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NUDT12 5/18 Interacting proteins for NUDT12 (ENSP00000230792 3 ) via UniProtKB, MINT, and/or STRING (see all 18 )About this table
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Drugs & Compoundsfor NUDT12 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for NUDT12
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Transcriptsfor NUDT12 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for NUDT12 gene: NM_031438.2
Additional cDNA sequence: AK098066.1 AK304010.1 AK309942.1 AL136592.1 BC026748.1 BC041099.1
4 DOTS entries : DT.70104078 DT.423151 DT.91837033 DT.95303722
24/61 AceView cDNA sequences (see all 61 ):
CA411882 CB131118 NM_031438 BC026748 BX281841 AI207545 BF033178 BG400646 BU930336 AI765426 CA446689 CA394947 BF513640 BC041099 AA329654 BM856229 BE327894 BQ428185 BI850602 BG545936 AW361036 AI635320 BM979756 AI520819
highest scoring ESTs for NUDT12 :AI635320 AK098066 AL136592 BC041099 BE384043 BI602095 BM451172 BQ221135 BQ428185 BX281841 Unigene Cluster for NUDT12:
Nudix (nucleoside diphosphate linked moiety X)-type motif 12 Hs.434289 [show with all ESTs ] Unigene Representative Sequence: NM_031438 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for NUDT12 (see all 7 ) ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 SP1 :     -         -   -               -       SP2 :     -         -   -                     SP3 :     -       -   -   -                     SP4 :     -                               SP5 :     -                              
About this scheme ECgene alternative splicing isoforms for NUDT12 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000230792 (uc003koi.2 uc011cvb.1 ) ENST00000515407 ENST00000507423 ENST00000508889 (uc010jbq.1 )
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Expression for NUDT12 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section NUDT12 expression in normal and diseased human tissues 1 / 2 / 3
4 probe-sets matching NUDT12 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
92016_at2 , 3
U95-D
1
1.00
1.00
1.00
1.00
AI635320
0.80
1.00
0.91
1
223535_at2 , 3
U133-B
1
0.82
1.00
--
--
AL136592
0.80
1.00
0.91
1
223535_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
1562775_at*2
U133Plus2
NULL
0.00
0.00
--
--
--
--
--
--
--
About this table
NUDT12 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GAAGGAGAAA SOURCE GeneReport for Unigene cluster: Hs.434289 SABiosciences Custom PCR Arrays for NUDT12
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Orthologsfor NUDT12 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for NUDT12 gene from 5/13 species (see all 13 )
About this table Species with no ortholog for NUDT12 ENSEMBL Gene Tree for NUDT12 (if available)
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Paralogsfor NUDT12 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for NUDT12 gene NUDT13 2
NUDT12 for paralogs About GeneDecksing
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Genomic Variantsfor NUDT12 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 5 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for NUDT12 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for NUDT12: --
QIAGEN SeqTarget long-range PCR primers for resequencing NUDT12
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Disorders & Mutationsfor NUDT12 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NUDT12 for disorders About GeneDecksing
OMIM: 609232 Human Genome Epidemiology (HuGE) Navigator: NUDT12 (1 document)Export disorders and mutations for NUDT12 gene to outside databases
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Medical Newsfor NUDT12 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor NUDT12 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/11 PubMed articles for NUDT12 gene, integrated from 7 sources (see all 11 ): (articles sorted by number of sources associating them with NUDT12) Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 1 , 2 , 3 Wiemann S.... Poustka A. (2001) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Mammalian NADH diphosphatases of the Nudix family: cloning and characterization of the human peroxisomal NUDT12 protein. (PubMed id 12790796) 1 , 2 Abdelraheim S.R.... McLennan A.G. (2003) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791) 1 Wang A.G....Kim N.S. (2006) The LIFEdb database in 2006. (PubMed id 16381901) 1 Mehrle A....Wiemann S. (2006) From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336) 1 Wiemann S....Poustka A. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PubMed id 11256614) 1 Simpson J.C.... Wiemann S. (2000)
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External Searches for NUDT12 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NUDT12 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NUDT12 gene
(According to HUGE )
About This Section --
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Specialized Databases showing NUDT12 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for NUDT12 gene: Search GeneIP for patents involving NUDT12 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NUDT12 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for NUDT12
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