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Aliases & Descriptionsfor PAAF1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions proteasomal ATPase-associated factor 11 2 WDR712 3 FLJ118481 2 WD repeat-containing protein 712 3 WD repeat domain 711 2 PAAF2 Rpn141 2 Protein G-163
Export aliases for PAAF1 gene to outside databases Previous GC identifers: GC11P073267 GC11P073588
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Summariesfor PAAF1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: PAAF1_HUMAN, Q9BRP4 Function : Inhibits proteasome 26S assembly and proteolytic activity by impairing the association of the 19S regulatorycomplex with the 20S core. In case of HIV-1 infection, recruited by viral Tat to the HIV-1 promoter, where it promotes the recruitment of 19S regulatory complex through dissociation of the proteasome 26S. This presumably promotes provirus transcription efficiency Gene Wiki entry for PAAF1
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Genomic Viewsfor PAAF1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for PAAF1 Other transcription factors Search SABiosciences Chromatin IP Primers for PAAF1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for PAAF1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11q13.4 Ensembl cytogenetic band: 11q13.4 HGNC cytogenetic band: 11q13.4 PAAF1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P069884: view genomic region
(about GC identifiers )
Start:
69,884,132 bp from pter
End:
69,934,556 bp from pter
Size:
50,425 bases
Orientation:
plus strand
1 alternative location : Chr 11+ 73,588,033-73,638,779
RefSeq DNA sequence: NC_000011.9 NT_167190.1
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Proteinsfor PAAF1 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: PAAF1_HUMAN, Q9BRP4 (See
protein sequence )Recommended Name: Proteasomal ATPase-associated factor 1 Size : 392 amino acids; 42190 Da
Subunit : Interacts with PSMC1, PSMC2, PSMC3, PSMC4, PSMC5 and PSMC6. Interacts with HIV-1 Tat
Secondary accessions : A6NDR5 Q4G165 Q53HS9 Q7Z500 Q8TBU6 Q9HAB6Alternative splicing : 2 isoforms : Q9BRP4-1 Q9BRP4-2 Explore the universe of human proteins at neXtProt for PAAF1: NX_Q9BRP4
REFSEQ proteins: NP_079431.1 ENSEMBL proteins: ENSP00000311665 ENSP00000365564 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0000502 proteasome complex
IEA --
About this table
PAAF1 for ontologies About GeneDecksing Antibodies for PAAF1: Assays for PAAF1:
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Protein
Domains/ Familiesfor PAAF1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PAAF1 for domains About GeneDecksing 5/8 InterPro domains/families (see all 8 ):
Graphical View of Domain Structure for InterPro Entry Q9BRP4 ProtoNet protein and cluster: Q9BRP4
UniProtKB/Swiss-Prot: PAAF1_HUMAN, Q9BRP4 Similarity : Belongs to the WD repeat PAAF1/RPN14 familySimilarity : Contains 5 WD repeats
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Gene Functionfor PAAF1 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: PAAF1_HUMAN, Q9BRP4 Function : Inhibits proteasome 26S assembly and proteolytic activity by impairing the association of the 19S regulatorycomplex with the 20S core. In case of HIV-1 infection, recruited by viral Tat to the HIV-1 promoter, where it promotes the recruitment of 19S regulatory complex through dissociation of the proteasome 26S. This presumably promotes provirus transcription efficiency
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
About this table
PAAF1 for ontologies About GeneDecksing
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Pathways & Interactionsfor PAAF1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for PAAF1 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PAAF1 5/34 Interacting proteins for PAAF1 (Q9BRP4 1 , 2 ENSP00000365564 3 ) via UniProtKB, MINT, and/or STRING (see all 34 )Interactant Interaction Details GeneCard External ID(s) PSMC4 P43686 1 , 2 , ENSP00000157812 3 EBI-1056358,EBI-743997 MINT-7230300 STRING: ENSP00000157812 PSMC1 P62191 1 , 2 EBI-1056358,EBI-357598 MINT-7230300 PSMC2 P35998 1 , 2 EBI-1056358,EBI-359710 MINT-7230300 PSMC3 P17980 1 , 2 EBI-1056358,EBI-359720 MINT-7230300 PSMC5 P62195 1 , 2 EBI-1056358,EBI-357745 MINT-7230300
About this table 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0044419 interspecies interaction between organisms
IEA --
About this table
PAAF1 for ontologies About GeneDecksing
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Drugs & Compoundsfor PAAF1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for PAAF1
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Transcriptsfor PAAF1 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for PAAF1 gene: NM_025155.1
Additional cDNA sequence: AF087895.1 AK021910.1 AK222501.1 AK225520.1 AK298258.1 AK309133.1 AK316394.1 BC006142.2 BC021541.1 BC028628.1 BC028677.1 BC045774.1 CR608221.1 CR621285.1 CR623159.1
8 DOTS entries : DT.314939 DT.92424389 DT.100783361 DT.40312236 DT.102829423 DT.40106995 DT.120754813 DT.95069811
24/156 AceView cDNA sequences (see all 156 ):
AA262678 BC006142 AW872789 BC021541 BQ892987 CR608221 BQ425623 CA441979 NM_025155 AI033544 AA446420 CA405808 AW298592 CA437149 AU119812 AA746090 CK299821 BM670134 CR623159 AA279808 BM700121 CF145036 AW250388 N59205 Unigene Cluster for PAAF1:
Proteasomal ATPase-associated factor 1 Hs.525017 [show with all ESTs ] Unigene Representative Sequence: BC045774 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for PAAF1 (see all 6 ) ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b SP1 :         -     -         -                       SP2 :         -     -   -   -     -                       SP3 :             -   -       -                       SP4 :             -   -   -     -                       SP5 :                                          
About this scheme ECgene alternative splicing isoforms for PAAF1 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000310571 (uc001ouk.1 uc001oul.1 uc009ytx.1 uc001oum.1 uc001oun.1 )ENST00000376384
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Expression for PAAF1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section PAAF1 expression in normal and diseased human tissues 1 / 2
5 probe-sets matching PAAF1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
50344_at2
U95-B
1
1.00
1.00
0.67
1.30
--
--
--
--
--
61748_at2
U95-C
1
0.44
1.00
0.92
0.71
--
--
--
--
--
218957_s_at2
U133-A
1
1.00
1.00
--
--
--
--
--
--
--
218957_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
1568702_a_at2
U133Plus2
1
0.27
1.00
--
--
--
--
--
--
--
About this table
PAAF1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCGTTTAATG SOURCE GeneReport for Unigene cluster: Hs.525017 UniProtKB/Swiss-Prot: PAAF1_HUMAN, Q9BRP4 Tissue specificity : Ubiquitously expressed, with highest levels in kidney, brain and testis
SABiosciences Custom PCR Arrays for PAAF1
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Orthologsfor PAAF1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for PAAF1 gene from 5/6 species (see all 6 )
About this table Species with no ortholog for PAAF1 ENSEMBL Gene Tree for PAAF1 (if available)
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Paralogsfor PAAF1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor PAAF1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 11 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for PAAF1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PAAF1: --
QIAGEN SeqTarget long-range PCR primers for resequencing PAAF1
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Disorders & Mutationsfor PAAF1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
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Medical Newsfor PAAF1 gene (Possibly Related Articles in
Doctor's Guide )
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Publicationsfor PAAF1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/15 PubMed articles for PAAF1 gene, integrated from 7 sources (see all 15 ): (articles sorted by number of sources associating them with PAAF1) Proteasomal ATPase-associated factor 1 negatively regulates proteasome activity by interacting with proteasomal ATPases. (PubMed id 15831487) 1 , 2 , 3, 7 Park Y.... Yoon J.-B. (2005) The proteasome regulates HIV-1 transcription by both proteolytic and nonproteolytic mechanisms. (PubMed id 17289585) 1 , 2 , 3 Lassot I....Kiernan R.E. (2007) Lower expression of catalytic and structural subunits of the proteasome contributes to decreased proteolysis in peripheral blood T lymphocytes during aging. (PubMed id 17317272) 1 , 3 Ponnappan S....Ponnappan U. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330) 2 Gauci S....Mohammed S. (2009) Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732) 1 Sowa M.E....Harper J.W. (2009) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007) Mass spectrometric characterization of the affinity-purified human 26S proteasome complex. (PubMed id 17323924) 2 Wang X.... Huang L. (2007) Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931) 1 Ewing R.M.... Figeys D. (2007)
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External Searches for PAAF1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PAAF1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PAAF1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing PAAF1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PAAF1 gene: Search GeneIP for patents involving PAAF1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PAAF1 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for PAAF1
ELISAs and CLIAs for PAAF1
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