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PAX3 Gene

protein-coding   GIFtS: 67

GC02M214918
paired box 3
(Previous names: Waardenburg syndrome 1, paired box gene 3 (Waardenburg syndrome 1) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: WS1)
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
paired box 31 2     MGC1203832
HUP21 2 3 5     paired box protein Pax-32
WS12 5     MGC1203842
CDHS2 5     paired box homeotic gene 32
WS32 5     MGC1347782
Waardenburg syndrome 11     MGC1203822
paired box gene 3 (Waardenburg syndrome 1)1     paired domain gene 32
MGC1203812     HuP23
paired domain gene HuP22     

External Ids:    HGNC: 86171   Entrez Gene: 50772   Ensembl: ENSG000001359037   UniProtKB: P237603   

Export aliases for PAX3 gene to outside databases

Previous GC identifers: GC02M221089 GC02M221788 GC02M223029 GC02M223267 GC02M222890 GC02M222772


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for PAX3:
This gene is a member of the paired box (PAX) family of transcription factors. Members of the PAX family typically
contain a paired box domain and a paired-type homeodomain. These genes play critical roles during fetal development.
Mutations in paired box gene 3 are associated with Waardenburg syndrome, craniofacial-deafness-hand syndrome, and
alveolar rhabdomyosarcoma. The translocation t(2;13)(q35;q14), which represents a fusion between PAX3 and the forkhead
gene, is a frequent finding in alveolar rhabdomyosarcoma. Alternative splicing results in transcripts encoding
isoforms with different C-termini. (provided by RefSeq)

UniProtKB/Swiss-Prot: PAX3_HUMAN, P23760
Function: Probable transcription factor associated with development of alveolar rhabdomyosarcoma


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the PAX3 gene promoter:
         MyoD   FOXO1a   E2F-5   E2F-4   E2F-3a   E2F-2   E2F-1   E2F   ATF6   CUTL1   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for PAX3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for PAX3 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q35-q37|2q35   Ensembl cytogenetic band:  2q36.1   HGNC cytogenetic band: 2q36.1

PAX3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PAX3 gene location

GeneLoc gene densities for chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M214918:  view genomic region     (about GC identifiers)

Start:
214,918,697 bp from pter
End:
215,017,780 bp from pter
Size:
99,084 bases
Orientation:
minus strand

1 alternative location:
Chr2- 223,064,607-223,163,715     
RefSeq DNA sequence:
NC_000002.11  NT_005403.17  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: PAX3_HUMAN, P23760 (See protein sequence)
Recommended Name: Paired box protein Pax-3  
Size: 479 amino acids; 52968 Da
Subunit: Can bind to DNA as a heterodimer with PAX7. Interacts with DAXX
Subcellular location: Nucleus
PDB structures from and Proteopedia :
3CMY (3D)    
Secondary accessions: Q16448 Q53T90 Q6GSJ9
Alternative splicing: 3 isoforms:  P23760-1   P23760-2   P23760-3   

Explore the universe of human proteins at neXtProt for PAX3: NX_P23760 

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (8 alternative transcripts): 
    NP_000429.2  NP_001120838.1  NP_039230.1  NP_852122.1  NP_852123.1  NP_852124.1  NP_852125.1  NP_852126.1  


    ENSEMBL proteins: 
    ENSP00000375921 ENSP00000342092 ENSP00000343052 ENSP00000375922 ENSP00000338767 ENSP00000386750 
    ENSP00000386817 ENSP00000258387 


    Human Recombinant Proteins 
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: PAX3
    GenScript Custom Purified and Recombinant Proteins Services for PAX3 
    Novus Biologicals Proteins for PAX3
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins

    1 Gene Ontology (GO) cellular component term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IEA--
    About this table

    PAX3 for ontologies           About GeneDecksing



    Antibodies for PAX3: 
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for PAX3
    R&D Systems Antibodies for PAX3
    OriGene Antibodies: PAX3
    GenScript Custom Superior Antibodies Services for PAX3 
    Novus Biologicals Antibodies for PAX3
    Epitomics antibodies for PAX3

    Assays for PAX3: 
    Browse Kits and Assays available from Millipore
    Browse ELISAs at Sigma-Aldrich
    OriGene Custom Immunoassay Development 
    Browse OriGene Fluorogenic Cell Assay Kits 
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for PAX3 
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for PAX3 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    PAX3 for domains           About GeneDecksing

    5/7 InterPro domains/families (see all 7):
     IPR001523 Paired_box_N
     IPR022106 Pax7
     IPR012287 Homeodomain-rel
     IPR011991 WHTH_trsnscrt_rep_DNA-bd
     IPR001356 Homeobox

    Graphical View of Domain Structure for InterPro Entry P23760

    ProtoNet protein and cluster: P23760

    1 Blocks protein family: IPB001523 Paired box protein

    UniProtKB/Swiss-Prot: PAX3_HUMAN, P23760
    Similarity: Belongs to the paired homeobox family
    Similarity: Contains 1 homeobox DNA-binding domain
    Similarity: Contains 1 paired domain


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    UniProtKB/Swiss-Prot: PAX3_HUMAN, P23760
    Function: Probable transcription factor associated with development of alveolar rhabdomyosarcoma

    Inhib.
    RNA:
        
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich esiRNA and siRNA for PAX3
    Sigma-Aldrich shRNA for PAX3
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 8): PAX3
    OriGene shRNA RFP (see all 8): PAX3
    OriGene basic RS shRNA (see all 8): PAX3
    OriGene siRNA (see all 8): PAX3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of PAX3 
    miRNA:Sigma-Aldrich microRNA Mimics for PAX3
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of PAX3 
    8/11 SABiosciences Assays for microRNAs that regulate PAX3 (see all 11):
    hsa-miR-206 hsa-miR-92a hsa-miR-509-5p hsa-miR-25 hsa-miR-1 hsa-miR-32 hsa-miR-664 hsa-miR-199a-5p

    Gene
    Editing:
    Browse CompoZr Knockout ZFN at Sigma-Aldrich 

    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    Browse iPSC Reprogramming Factors at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector (see all 7): PAX3
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector (see all 8): PAX3
    OriGene untagged cDNA clones in CMV expression vector (see all 8): PAX3
    OriGene 3'-UTR clone (see all 8): PAX3 
    Browse MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for PAX3 
    Browse Sino Biological Human cDNA Clones

    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for PAX3 

    Genatlas biochemistry entry for PAX3:
    paired box (DNA binding) containing protein 3 (HuP2),with an homeo domain,mouse Pax3,splotch homolog,involved in
    neurogenesis and in melanogenesis through MITF transactivation ? and other processes (see
    BARMS2,WS1,WS2,WS3),interacting with HIRA,activating MYOD1 gene

    5/9 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 9):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677 DNA binding ----
    GO:0003682 chromatin binding ----
    GO:0003700 sequence-specific DNA binding transcription factor activity IEA--
    GO:0003705 sequence-specific enhancer binding RNA polymerase II transcription factor activity ----
    GO:0005515 protein binding IPI11029584
    About this table

    PAX3 for ontologies           About GeneDecksing

    Animal Models: 15/27 MGI mutant phenotypes (inferred from 29 alleles(MGI details for Pax3) (see all 27):

    behavior/neurologicalcardiovascular systemcellularcraniofacialdigestive/alimentary
    embryogenesisendocrine/exocrine glandgrowth/sizehearing/vestibular/earhematopoietic system
    homeostasis/metabolismimmune systemlethality-postnatallethality-prenatal/perinatallife span-post-weaning/aging

    PAX3 for phenotypes           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section


    PAX3 for pathways           About GeneDecksing

    1 Millipore Pathway for PAX3
        Transcription factors in neurogenesis

    1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for  PAX3
        Melanocyte Development and Pigmentation Signaling

        SABiosciences Pathway-Focused PCR Arrays including PAX3 (see all 3): PAHS-083A PAHS-099A  

        Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for PAX3
        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PAX3

    5/9 Interacting proteins for PAX3 (P237601, 2 ENSP000003430523) via UniProtKB, MINT, and/or STRING (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SOX10P566931, ENSP000003541303EBI-1167564,EBI-1167533 STRING: ENSP00000354130
    ABL1P005191, 2EBI-1167564,EBI-375543 MINT-7243666
    FYNP062411, 2EBI-1167564,EBI-515315 MINT-7246414
    GRB2P629931, 2EBI-1167564,EBI-401755 MINT-7253794
    NCK1P163331, 2EBI-1167564,EBI-389883 MINT-7249198
    About this table

    5/21 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 21):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122 negative regulation of transcription from RNA polymerase II promoter ----
    GO:0001755 neural crest cell migration ----
    GO:0001843 neural tube closure ----
    GO:0006355 regulation of transcription, DNA-dependent IEA--
    GO:0006366 transcription from RNA polymerase II promoter TAS9500554
    About this table

    PAX3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    PAX3 for compounds           About GeneDecksing

    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for PAX3
    6 Novoseek chemical compound relationships for PAX3 gene
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    n-ethylmaleimide 5.73 2 12356307 (1)
    oligonucleotide 0 2 11590174 (1), 10063718 (1)
    tyrosine 0 2 10508520 (1), 18573711 (1)
    cysteine 0 3 16752906 (2), 12356307 (1)
    cycloheximide 0 1 15184910 (1)
    glutamine 0 1 10829299 (1)
    About this table



    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich esiRNA and siRNA for PAX3
    Sigma-Aldrich shRNA for PAX3
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 8): PAX3
    OriGene shRNA RFP (see all 8): PAX3
    OriGene basic RS shRNA (see all 8): PAX3
    OriGene siRNA (see all 8): PAX3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of PAX3 
    miRNA: Sigma-Aldrich microRNA Mimics for PAX3
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of PAX3 
    8/11 SABiosciences Assays for microRNAs that regulate PAX3 (see all 11):
    hsa-miR-206 hsa-miR-92a hsa-miR-509-5p hsa-miR-25 hsa-miR-1 hsa-miR-32 hsa-miR-664 hsa-miR-199a-5p
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector (see all 7): PAX3
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector (see all 8): PAX3
    OriGene untagged cDNA clones in CMV expression vector (see all 8): PAX3
    OriGene 3'-UTR Clone (see all 8): PAX3 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for PAX3 
    Primers: OriGene genome-wide validated SYBR primer pairs: PAX3
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for PAX3: PPH06927A

    REFSEQ mRNAs for PAX3 gene (8 alternative transcripts): 

    NM_000438.5  NM_001127366.2  NM_013942.4  NM_181457.3  NM_181458.3  NM_181459.3  NM_181460.3  NM_181461.3  

    Additional cDNA sequence: 

    AK291278.1 AY251279.1 AY251280.1 BC063547.1 BC101299.3 BC101300.2 BC101301.2 BC101302.2 
    BC114363.2 L07483.1 S69369.1 S69370.1 U02309.1 

    7 DOTS entries:

    DT.452351  DT.100754940  DT.308173  DT.92454308  DT.100754939  DT.121028236  DT.100754941 

    24/56 AceView cDNA sequences (see all 56):

    AI082656 NM_181457 N27673 N71677 AI382891 CA389778 NM_181460 BX108282 
    NM_013942 NM_181459 NM_181461 NM_000438 AI379568 NM_181458 N42304 N33148 
    L07483 N42834 AA258758 H97691 AI332917 S69370 AI804068 S69369 

    highest scoring ESTs for PAX3:

    S69369 S69370 AU127982 AY251279 AY251280 BC063547 BG739787 N99648 U02309 AA194167 

    Unigene Cluster for PAX3:

    Paired box 3
    Hs.42146  [show with all ESTs]
    Unigene Representative Sequence: NM_181458


    GeneLoc Exon Structure

    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000392069(uc002vmt.1) ENST00000344493(uc002vmw.1 uc002vmx.1)
    ENST00000350526(uc010fwo.2) ENST00000392070 ENST00000336840 ENST00000409551(uc002vmy.1 uc002vmv.1)
    ENST00000464706 ENST00000409828(uc002vna.1) ENST00000258387(uc002vmz.1)


    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    PAX3 expression in normal and diseased human tissues

    1  / 2  / 3

    13 probe-sets matching PAX3 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    45189_at2, 3 U95-B 1 0.94 1.00 0.94 0.95 AA194167 0.60 1.00 0.82 1
    1345_s_at2, 3 U95-A 1 0.94 1.00 0.16 0.36 S69370 1.00 1.00 1.00 1
    38900_at2, 3 U95-A 1 0.88 1.00 0.65 1.48 U02309 0.80 1.00 0.91 1
    61426_at2, 3 U95-C 1 0.81 1.00 0.68 0.72 N99648 0.80 1.00 0.91 1
    1344_at2, 3 U95-A 1 0.81 1.00 0.11 0.52 S69369 1.00 1.00 1.00 1
    216059_at2, 3 U133-A 1 1.00 1.00 -- -- U02309 0.80 1.00 0.91 1
    207680_x_at2, 3 U133-A 1 1.00 1.00 -- -- NM_013942 0.60 1.00 0.82 1
    231666_at2, 3 U133-B 1 0.91 1.00 -- -- AA194168 0.60 1.00 0.82 1
    207679_at2, 3 U133-A 1 0.82 1.00 -- -- NM_000438 0.60 1.00 0.82 1
    216059_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    207680_x_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    231666_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
    207679_at2 U133Plus2 1 0.82 1.00 -- -- -- -- -- -- --
    About this table

    PAX3 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    PAX3 gene expression
    PAX3 gene electronic northern expression
    PAX3 gene sage expression
    About these images

    CGAP SAGE TAG: TAAAAAGTGC

    SOURCE GeneReport for Unigene cluster: Hs.42146

    Expression variation in blood from EXPOLDB for PAX3

    Primers: OriGene genome-wide validated SYBR primer pairs: PAX3
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for PAX3: PPH06927A
        SABiosciences Expression via Pathway-Focused PCR Arrays including PAX3 (see all 3): PAHS-083A PAHS-099A  


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for PAX3 gene from 5/10 species (see all 10)
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    PAX31   -- paired box 3 91.32(n)
    98.47(a)
    488544  XM_545664.2  XP_545664.2 
    chimpanzee
    (Pan troglodytes)
    PAX31   -- paired box 3 99.74(n)
    100(a)
    459971  XM_001165390.1  XP_001165390.1 
    cow
    (Bos taurus)
    PAX31   -- paired box 3 93.69(n)
    99.23(a)
    540951  XM_871932.2  XP_877025.2 
    rat
    (Rattus norvegicus)
    Pax31   -- paired box 3 90.55(n)
    98.29(a)
    114502  XM_343601.3  XP_343602.3 
    mouse
    (Mus musculus)
    Pax31 , 5 1 (39.79 cM)5
    paired box gene 31, 5 91.7(n)1
    98.52(a)1
    185051  NM_008781.31  NP_032807.21 
     AK0124935  AK0143375  (see all 19)
    About this table        Species with no ortholog for PAX3

    ENSEMBL Gene Tree for PAX3 (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for PAX3 gene
    PAX72  PAX62  PAX42  

    PAX3 for paralogs           About GeneDecksing



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    10/1019 NCBI SNPs in PAX3 are shown (see all 1019)
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 2 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ----------
    rs7521721,2
    C,A,H,223092217(+) gaggcA/Gggagg 6 -- int10--------
    rs7626061,2
    --223067206(-) TTTATC/GACTAG 6 -- int13Minor allele frequency- G:0.00NA EA WA 316
    rs9301401,2
    C,F,A,223148292(-) TCTGAA/GGATTG 6 -- int130Minor allele frequency- N:0.00NA EA WA NS 2290
    rs9840421,2
    H223101863(-) TCCTAG/AGATTG 6 -- int17Minor allele frequency- A:0.00NA EA WA NS 708
    rs9840431,2
    C,F,223101726(-) ATAGAG/TTCAAA 6 -- int115Minor allele frequency- T:0.12NS EA NA WA 642
    rs10132621,2
    C,F,O,A,223090779(-) CAAAAA/CTGTGA 6 -- int125Minor allele frequency- C:0.17NA EA WA NS 1862
    rs10420511,2
    --223066851(-) TTACGC/TGCTCT 10 V A mis1 ref1 int1 ese31Minor allele frequency- T:0.00MN 184
    rs10420531,2
    --223066849(-) ACGCGC/TTCTCC 10 L F ref1 mis1 int1 trp31Minor allele frequency- T:0.00MN 184
    rs13674081,2
    C,F,O,A,223138037(-) AGCCCG/AAAAAT 6 -- int125Minor allele frequency- A:0.22NA EA WA NS 1618
    rs13674091,2
    C,F,O,A,223102757(+) AAATTG/TTTAGT 6 -- int119Minor allele frequency- T:0.29NS EA NA WA 1106
    About this table

    HapMap Linkage Disequilibrium images for PAX3 (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for PAX3
         2 CNVs: 50404 4328

    QIAGEN SeqTarget long-range PCR primers for resequencing PAX3 

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    PAX3 for disorders           About GeneDecksing

    OMIM: 606597   disorders: 193500  148820  122880  268220  

    UniProtKB/Swiss-Prot: PAX3_HUMAN, P23760

  • Defects in PAX3 are the cause of Waardenburg syndrome type 1 (WS1) [MIM:193500]. WS1 is an autosomal dominant
  • disorder characterized by wide bridge of nose owing to lateral displacement of the inner canthus of each eye (dystopia
    canthorum), pigmentary disturbances such as frontal white blaze of hair, heterochromia of irides, white eyelashes,
    leukoderma and sensorineural deafness. The syndrome shows variable clinical expression and some affected individuals
    do not manifest hearing impairment
  • Defects in PAX3 are the cause of Waardenburg syndrome type 3 (WS3) [MIM:148820]; also known as
  • Klein-Waardenburg syndrome or Waardenburg syndrome with upper limb anomalies or white forelock with malformations. WS3
    is a very rare autosomal dominant disorder, which shares many of the characteristics of WS1. Patients additionally
    present with musculoskeletal abnormalities
  • Defects in PAX3 are the cause of craniofacial-deafness-hand syndrome (CDHS) [MIM:122880]. CDHS is thought to
  • be an autosomal dominant disease which comprises absence or hypoplasia of the nasal bones, hypoplastic maxilla, small
    and short nose with thin nares, limited movement of the wrist, short palpebral fissures, ulnar deviation of the
    fingers, hypertelorism and profound sensory-neural deafness
  • Defects in PAX3 are a cause of rhabdomyosarcoma type 2 (RMS2) [MIM:268220]. It is a form of rhabdomyosarcoma,
  • a highly malignant tumor of striated muscle derived from primitive mesenchimal cells and exhibiting differentiation
    along rhabdomyoblastic lines. Rhabdomyosarcoma is one of the most frequently occurring soft tissue sarcomas and the
    most common in children. It occurs in four forms: alveolar, pleomorphic, embryonal and botryoidal rhabdomyosarcomas.
    Note=A chromosomal aberration involving PAX3 is found in rhabdomyosarcoma. Translocation (2;13)(q35;q14) with FOXO1.
    The resulting protein is a transcriptional activator
  • Note=A chromosomal aberration involving PAX3 is a cause of rhabdomyosarcoma. Translocation t(2;2)(q35;p23)
  • with NCOA1 generates the NCOA1-PAX3 oncogene consisting of the N-terminus part of PAX3 and the C-terminus part of
    NCOA1. The fusion protein acts as a transcriptional activator. Rhabdomyosarcoma is the most common soft tissue
    carcinoma in childhood, representing 5-8% of all malignancies in children

    10/33 Novoseek disease relationships for PAX3 gene (see all 33)

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    waardenburgs syndrome 97.1 59 7897628 (2), 9302254 (2), 10982026 (2), 10521655 (2) (see all 47)
    waardenburg syndrome, type i 94.8 14 10779847 (2), 8486353 (2), 8533800 (1), 17254487 (1) (see all 10)
    rhabdomyosarcoma alveolar 94.5 37 9973247 (2), 8098985 (2), 11171995 (2), 8275086 (1) (see all 30)
    craniofacial-deafness-hand syndrome 93.1 4 18627422 (1), 8664898 (1), 10521655 (1), 18553554 (1)
    klein-waardenburg syndrome 91.3 1 11683776 (1)
    muscle cancer 86.1 1 16140913 (1)
    rhabdomyosarcoma embryonal 80.5 8 19215790 (2), 10554014 (1), 19953635 (1), 12647804 (1) (see all 5)
    rhabdomyosarcoma 79.4 24 15602708 (4), 9546061 (2), 15688409 (2), 17350164 (2) (see all 14)
    musculoskeletal abnormalities 74.9 1 18553554 (1)
    piebaldism 66 1 11041370 (1)
    About this table

    GeneTests: PAX3
    Waardenburg Syndrome Type I

    Locus Specific Mutation Databases (LSDB): PAX3
    Human Gene Mutation Database (HGMD): PAX3
    Human Genome Epidemiology (HuGE) Navigator: PAX3 (8 documents)

    Export disorders and mutations for PAX3 gene to outside databases

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    10/310 PubMed articles for PAX3 gene, integrated from 7 sources (see all 310):
    (articles sorted by number of sources associating them with PAX3)
    1. An exonic mutation in the HuP2 paired domain gene causes Waardenburg's syndrome. (PubMed id 1347149)1, 2, 3 Baldwin C.T.... Milunsky A. (1992)
    2. Mutations in PAX3 that cause Waardenburg syndrome type I: ten new mutations and review of the literature. (PubMed id 8533800)1, 2, 7 Baldwin C.T.... Milunsky A. (1995)
    3. Further elucidation of the genomic structure of PAX3, and identification of two different point mutations within the PAX3 homeobox that cause Waardenburg syndrome type 1 in two families. (PubMed id 7825605)1, 2, 7 Lalwani A.K.... Wilcox E.R. (1995)
    4. Homozygous and heterozygous inheritance of PAX3 mutations causes different types of Waardenburg syndrome. (PubMed id 12949970)1, 2, 7 Wollnik B.... Yuksel-Apak M. (2003)
    5. The Pax3-FKHR oncoprotein is unresponsive to the Pax3-associated repressor hDaxx. (PubMed id 10393185)1, 2, 7 Hollenbach A.D.... Grosveld G. (1999)
    6. PAX3 gene structure and mutations: close analogies between Waardenburg syndrome and the Splotch mouse. (PubMed id 7981674)1, 2, 7 Tassabehji M.... Read A.P. (1994)
    7. Septo-optic dysplasia and WS1 in the proband of a WS1 family segregating for a novel mutation in PAX3 exon 7. (PubMed id 9541113)1, 2, 7 Carey M.L.... Innis J.W. (1998)
    8. Isolation of two isoforms of the PAX3 gene transcripts and their tissue-specific alternative expression in human adult tissues. (PubMed id 7545913)1, 2, 7 Tsukamoto K.... Niikawa N. (1994)
    9. Mutations in the PAX3 gene causing Waardenburg syndrome type 1 and type 2. (PubMed id 8490648)1, 2, 7 Tassabehji M....Strachan T. (1993)
    10. Identification of a novel mutation in the paired domain of PAX3 in an Iranian family with waardenburg syndrome type I. (PubMed id 10779847)1, 2, 7 Sotirova V.N.... Sarfarazi M. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5077 HGNC: 8617 AceView: PAX3 Ensembl:ENSG00000135903 euGenes: HUgn5077
    ECgene: PAX3 H-InvDB: PAX3

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    ATLAS Chromosomes in Cancer entry for PAX3 Genetics and Cytogenetics in Oncology and Haematology
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PAX3

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