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Aliases & Descriptionsfor PFDN1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions prefoldin subunit 11 2 PFD11 2 3 prefoldin 11 2 PDF2
Export aliases for PFDN1 gene to outside databases Previous GC identifers: GC05M139447 GC05M140207 GC05M139607 GC05M139653 GC05M139604
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Summariesfor PFDN1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PFDN1 : This gene encodes a member of the prefoldin beta subunit family. The encoded protein is one of six subunits of prefoldin, a molecular chaperone complex that binds and stabilizes newly synthesized polypeptides, thereby allowing them to fold correctly. The complex, consisting of two alpha and four beta subunits, forms a double beta barrel assembly with six protruding coiled-coils. (provided by RefSeq) UniProtKB/Swiss-Prot: PFD1_HUMAN, O60925 Function : Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascentpolypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins Gene Wiki entry for PFDN1
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Genomic Viewsfor PFDN1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PFDN1 gene promoter: Bach1 Hlf FOXJ2 (long isoform) POU2F1 Pbx1a Cdc5 NF-1 TBP E4BP4 Elk-1 Other transcription factors Search SABiosciences Chromatin IP Primers for PFDN1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q31 Ensembl cytogenetic band: 5q31.3 HGNC cytogenetic band: 5q31 PFDN1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M134769: view genomic region
(about GC identifiers )
Start:
134,769,914 bp from pter
End:
134,827,849 bp from pter
Size:
57,936 bases
Orientation:
minus strand
1 alternative location : Chr 5- 139,624,624-139,682,706
RefSeq DNA sequence: NC_000005.9 NT_029289.11
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Proteinsfor PFDN1 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: PFD1_HUMAN, O60925 (See
protein sequence )Recommended Name: Prefoldin subunit 1 Size : 122 amino acids; 14210 Da
Subunit : Heterohexamer of two PFD-alpha type and four PFD-beta type subunits
Secondary accessions : B2RD02 Q53F95 Q96EX6Explore the universe of human proteins at neXtProt for PFDN1: NX_O60925
REFSEQ proteins: NP_002613.2 ENSEMBL proteins: ENSP00000261813 ENSP00000426383 ENSP00000428707 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
PFDN1 for ontologies About GeneDecksing Antibodies for PFDN1: Assays for PFDN1:
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Protein
Domains/ Familiesfor PFDN1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PFDN1 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O60925 ProtoNet protein and cluster: O60925
1 Blocks protein family : IPB002777 Prefoldin-related KE2 protein UniProtKB/Swiss-Prot: PFD1_HUMAN, O60925 Similarity : Belongs to the prefoldin subunit beta family
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Gene Functionfor PFDN1 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: PFD1_HUMAN, O60925 Function : Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascentpolypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins
Genatlas biochemistry entry for PFDN1 :prefoldin subunit 1,keratin homologous 3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
PFDN1 for ontologies About GeneDecksing Animal Models: 7 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Pfdn1) :
PFDN1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor PFDN1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Pathway-Focused PCR Array including PFDN1 : PAHS-076A Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PFDN1 5/40 Interacting proteins for PFDN1 (O60925 1 , 2 ENSP00000261813 3 ) via UniProtKB, MINT, and/or STRING (see all 40 )About this table 4 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
PFDN1 for ontologies About GeneDecksing
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Drugs & Compoundsfor PFDN1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for PFDN1
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Transcriptsfor PFDN1 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for PFDN1 gene: NM_002622.4
Additional cDNA sequence: AK093558.1 AK223394.1 AK315353.1 BC003620.1 BC006202.1 BC011869.2 CR597655.1 CR599219.1 CR603344.1 CR604906.1 CR605241.1 CR610512.1 CR613979.1 CR622770.1 CR623755.1 Y17392.1
19 DOTS entries : DT.101974730 DT.100880577 DT.319565 DT.100880562 DT.92470190 DT.120860634 DT.120860658 DT.100880575
DT.95082069 DT.120867829 DT.100880580 DT.95334063 DT.100880581 DT.40129481 DT.92470195 DT.100880579 DT.120860629 DT.92004836 DT.95112501 24/538 AceView cDNA sequences (see all 538 ):
AI262235 BM703941 BM757872 AW244078 BM759424 BM680359 CD370365 BX477700 BI962964 BQ000726 AI871194 BU689578 CB853640 BQ001855 CB119788 AI337511 BM977715 CR604906 AW337534 AW117523 AI240235 BQ010123 BE893265 BQ614411
highest scoring ESTs for PFDN1 :D45333 AA147788 AA310532 AL536774 AV764327 AW160381 BC003620 BC006202 BC011869 BE249937 Unigene Cluster for PFDN1:
Prefoldin subunit 1 Hs.483564 [show with all ESTs ] Unigene Representative Sequence: AK093558 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for PFDN1 ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b SP1 :         -       SP2 :     -     -       SP3 :              
About this scheme ECgene alternative splicing isoforms for PFDN1 7 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000261813 (uc003lfe.1 uc003lff.1 uc003lfg.1 uc003lfh.1 )ENST00000514611 ENST00000510217 ENST00000512707 ENST00000524074 ENST00000512925 ENST00000507185
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Expression for PFDN1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section PFDN1 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching PFDN1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
39435_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
D45333
1.00
1.00
1.00
1
201507_at2 , 3
U133-A
1
0.73
1.00
--
--
NM_002622
0.60
1.00
0.82
1
201507_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
About this table
PFDN1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAGTAGACAG SOURCE GeneReport for Unigene cluster: Hs.483564 Expression variation in blood from EXPOLDB for PFDN1
SABiosciences Expression via Pathway-Focused PCR Array including PFDN1 : PAHS-076A
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Orthologsfor PFDN1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for PFDN1 gene from 5/10 species (see all 10 )
About this table Species with no ortholog for PFDN1 ENSEMBL Gene Tree for PFDN1 (if available)
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Paralogsfor PFDN1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor PFDN1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 5 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for PFDN1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PFDN1: --
QIAGEN SeqTarget long-range PCR primers for resequencing PFDN1
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Disorders & Mutationsfor PFDN1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PFDN1 for disorders About GeneDecksing
OMIM: 604897 Export disorders and mutations for PFDN1 gene to outside databases
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Medical Newsfor PFDN1 gene (Possibly Related Articles in
Doctor's Guide )
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Publicationsfor PFDN1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/23 PubMed articles for PFDN1 gene, integrated from 7 sources (see all 23 ): (articles sorted by number of sources associating them with PFDN1) Prefoldin, a chaperone that delivers unfolded proteins to cytosolic chaperonin. (PubMed id 9630229) 1 , 2 , 3 Vainberg I.E....Cowan N.J. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Expression, cellular distribution and protein binding of the glioma amplified sequence (GAS41), a highly conserved putative transcription factor. (PubMed id 11521196) 1 , 7 Munnia A.... Meese E. (2001) Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330) 2 Gauci S....Mohammed S. (2009) Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732) 1 Sowa M.E....Harper J.W. (2009) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 1 Barbe L....Andersson-Svahn H. (2008) Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931) 1 Ewing R.M.... Figeys D. (2007) PhLP3 modulates CCT-mediated actin and tubulin folding via ternary complexes with substrates. (PubMed id 16415341) 1 Stirling P.C.... Leroux M.R. (2006) A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070) 1 Stelzl U.... Wanker E.E. (2005)
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External Searches for PFDN1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PFDN1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PFDN1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing PFDN1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PFDN1 gene: Search GeneIP for patents involving PFDN1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PFDN1 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for PFDN1
ELISAs and CLIAs for PFDN1
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