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Aliases & Descriptionsfor PIP5KL1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions phosphatidylinositol-4-phosphate 5-kinase-like 11 2 PIPKH2 5 MGC464241 2 phosphatidylinositol-4-phosphate 5-kinase-like protein 12 bA203J24.51 2 phosphatidylinositol phosphate kinase homolog2 PtdIns(4)P-5-kinase-like protein 12 3 EC 2.7.1.683 PI(4)P 5-kinase-like protein 12 3
Export aliases for PIP5KL1 gene to outside databases Previous GC identifers: GC09M126060 GC09M127763 GC09M129723 GC09M130683
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Summariesfor PIP5KL1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PIP5KL1 : PIP5KL1 is a phosphoinositide kinase-like protein that lacks intrinsic lipid kinase activity but associates with type I PIPKs (see PIP5K1A; MIM 603275) and may play a role in localization of PIPK activity (Chang et al., 2004 (PubMed 14701839)).(supplied by OMIM) UniProtKB/Swiss-Prot: PI5L1_HUMAN, Q5T9C9 Function : May act as a scaffold to localize and regulate type I PI(4)P 5-kinases to specific compartments within thecell, where they generate PI(4,5)P2 for actin nucleation, signaling and scaffold protein recruitment and conversion to PI(3,4,5)P3 (By similarity)
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Genomic Viewsfor PIP5KL1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PIP5KL1 gene promoter: MEF-2A Other transcription factors Search SABiosciences Chromatin IP Primers for PIP5KL1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for PIP5KL1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9q34.11 Ensembl cytogenetic band: 9q34.11 HGNC cytogenetic band: 9q34.13 PIP5KL1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M100300: view genomic region
(about GC identifiers )
Start:
100,300,746 bp from pter
End:
100,310,021 bp from pter
Size:
9,276 bases
Orientation:
minus strand
1 alternative location : Chr 9- 130,683,158-130,693,076
RefSeq DNA sequence: NC_000009.11 NT_008470.19
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Proteinsfor PIP5KL1 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: PI5L1_HUMAN, Q5T9C9 (See
protein sequence )Recommended Name: Phosphatidylinositol-4-phosphate 5-kinase-like protein 1 Size : 394 amino acids; 44572 Da
Subunit : Heterodimerizes with other type I phosphatidylinositol-4-phosphate 5-kinase (By similarity)
Subcellular location : Cytoplasm. Membrane. Note=Localized to large cytoplasmic vesicular structures (By similarity)
Caution : It is unsure if the enzyme has intrinsic kinase activity
Secondary accessions : Q8IVS3Alternative splicing : 2 isoforms : Q5T9C9-1 Q5T9C9-2 Explore the universe of human proteins at neXtProt for PIP5KL1: NX_Q5T9C9 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001128691.1 NP_775763.1 ENSEMBL proteins: ENSP00000373398 ENSP00000373399 ENSP00000300432 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
PIP5KL1 for ontologies About GeneDecksing Antibodies for PIP5KL1: Assays for PIP5KL1:
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Protein
Domains/ Familiesfor PIP5KL1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PIP5KL1 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q5T9C9 ProtoNet protein and cluster: Q5T9C9
1 Blocks protein family : IPB002498 Phosphatidylinositol-4-phosphate 5-kinase UniProtKB/Swiss-Prot: PI5L1_HUMAN, Q5T9C9 Similarity : Contains 1 PIPK domain
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Gene Functionfor PIP5KL1 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: PI5L1_HUMAN, Q5T9C9 Function : May act as a scaffold to localize and regulate type I PI(4)P 5-kinases to specific compartments within thecell, where they generate PI(4,5)P2 for actin nucleation, signaling and scaffold protein recruitment and conversion to PI(3,4,5)P3 (By similarity) Catalytic activity : ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol4,5-bisphosphate Enzyme Number (IUBMB): EC 2.7.1.68
5/7 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 7 ):
About this table
PIP5KL1 for ontologies About GeneDecksing
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Pathways & Interactionsfor PIP5KL1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
PIP5KL1 for pathways About GeneDecksing 5 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for PIP5KL1 3 Kegg Pathways (Kegg details for PIP5KL1) : SABiosciences Custom Pathway-Focused PCR Arrays for PIP5KL1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for PIP5KL1 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PIP5KL1 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0046488 phosphatidylinositol metabolic process
IEA --
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PIP5KL1 for ontologies About GeneDecksing
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Drugs & Compoundsfor PIP5KL1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
PIP5KL1 for compounds About GeneDecksing Browse Tocris compounds for PIP5KL1 8 Novoseek chemical compound relationships for PIP5KL1 gene
About this table
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Transcriptsfor PIP5KL1 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for PIP5KL1 gene (2 alternative transcripts): NM_001135219.1 NM_173492.1
Additional cDNA sequence: BC042184.1
6 DOTS entries : DT.100022493 DT.91899619 DT.91812678 DT.91837732 DT.97777253 DT.95362824
24/33 AceView cDNA sequences (see all 33 ):
NM_173492 Z38321 BM980218 BU739350 BC042184 BM726577 CA425729 BI520079 BQ014508 BM714700 BE019642 BM786675 BF817093 BX112998 BQ774376 AI923090 BI085535 BG697332 BU621382 BG676659 BQ574658 BE787282 BE881330 BM476476
highest scoring ESTs for PIP5KL1 :BC042184 BI520079 BE787282 BE881330 BF761749 BF971892 BI085535 BI462029 BI830688 BM476476 Unigene Cluster for PIP5KL1:
Phosphatidylinositol-4-phosphate 5-kinase-like 1 Hs.445486 [show with all ESTs ] Unigene Representative Sequence: NM_001135219 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for PIP5KL1 (see all 6 ) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10a · 10b SP1 :             -   -   -       -   -               SP2 :     -         -   -   -                       SP3 :                         -               SP4 :                     -     -               SP5 :                       -   -              
About this scheme ECgene alternative splicing isoforms for PIP5KL1 13 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000495448 ENST00000464759 ENST00000477191 ENST00000490773 ENST00000388746 ENST00000497234 ENST00000498783 ENST00000485562 ENST00000476624 ENST00000388747 (uc011mao.1 )ENST00000300432 (uc004bsu.2 ) ENST00000464108 ENST00000492296
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Expression for PIP5KL1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section PIP5KL1 expression in normal and diseased human tissues 1 / 2 / 3
5 probe-sets matching PIP5KL1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
57855_at2 , 3
U95-C
1
0.31
1.00
1.00
1.00
AI923090
0.40
1.00
0.76
1
243116_at2 , 3
U133-B
1
0.36
1.00
--
--
AI923090
0.40
1.00
0.76
1
208162_s_at*2
U133-A
7
0.46
0.14
--
--
--
--
--
--
--
243116_at2
U133Plus2
1
0.36
1.00
--
--
--
--
--
--
--
208162_s_at*2
U133Plus2
7
0.46
0.14
--
--
--
--
--
--
--
About this table
PIP5KL1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAATGGAGGC SOURCE GeneReport for Unigene cluster: Hs.445486 SABiosciences Custom PCR Arrays for PIP5KL1
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Orthologsfor PIP5KL1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for PIP5KL1 gene from 5 species
About this table Species with no ortholog for PIP5KL1 ENSEMBL Gene Tree for PIP5KL1 (if available)
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Paralogsfor PIP5KL1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for PIP5KL1 gene PIP5K1B 2 PIP4K2A 2 PIP5K1C 2 PIP4K2B 2 PIP4K2C 2 PIP5K1A 2
PIP5KL1 for paralogs About GeneDecksing
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Genomic Variantsfor PIP5KL1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 9 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for PIP5KL1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PIP5KL1: --
QIAGEN SeqTarget long-range PCR primers for resequencing PIP5KL1
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Disorders & Mutationsfor PIP5KL1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PIP5KL1 for disorders About GeneDecksing
OMIM: 612865 1 Novoseek disease relationship for PIP5KL1 gene
About this table Export disorders and mutations for PIP5KL1 gene to outside databases
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Medical Newsfor PIP5KL1 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor PIP5KL1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/41 PubMed articles for PIP5KL1 gene, integrated from 7 sources (see all 41 ): (articles sorted by number of sources associating them with PIP5KL1) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 , 3 Strausberg R.L....Marra M.A. (2002) Identification and characterization of a phosphoinositide phosphate kinase homolog. (PubMed id 14701839) 1 , 7 Chang J.D....Cantley L.C. (2004) Overexpression of PIP5KL1 suppresses cell proliferati on and migration in human gastric cancer cells. (PubMed id 19680787) 1 Shi L....Huang C.Z. (2010) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 2 Humphray S.J.... Dunham I. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Overexpression of PIP5KL1 suppresses the growth of hu man cervical cancer cells in vitro and in vivo. (PubMed id 19947914) 7 Shi L....Huang C. (2010) Structural basis for the phosphorylation-regulated focal adhesion targeting of type Igamma phosphatidylinositol phosphate kinase (PIPKIgamma) by talin. (PubMed id 16616931) 7 Kong X....Qin J. (2006) Structural basis for phosphatidylinositol phosphate kinase type Igamma binding to talin at focal adhesions. (PubMed id 15623515) 7 de Pereda J.M....Liddington R.C. (2005) Phosphatidylinositol phosphate kinases put PI4,5P(2) in its place. (PubMed id 14502432) 7 Doughman R.L....Anderson R.A. (2003)
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External Searches for PIP5KL1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PIP5KL1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PIP5KL1 gene
(According to HUGE )
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Specialized Databases showing PIP5KL1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PIP5KL1 gene: Search GeneIP for patents involving PIP5KL1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PIP5KL1 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for PIP5KL1
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Transcripts for PIP5KL1
Variants for PIP5KL1
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