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Aliases & Descriptionsfor PPFIBP2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions PTPRF interacting protein, binding protein 2 (liprin beta 2)1 2 DKFZp781K061262 Cclp11 2 liprin-beta-22 Protein tyrosine phosphatase receptor type f polypeptide-interactingprotein-binding protein 22 3 MGC425412 PTPRF-interacting protein-binding protein 22 3
Export aliases for PPFIBP2 gene to outside databases Previous GC identifers: GC11P008370 GC11P007995 GC11P007494 GC11P007499 GC11P007491
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Summariesfor PPFIBP2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PPFIBP2 : PPFIBP2, or liprin-beta-2, belongs to the liprin-beta family. See liprin-beta-1 (MIM 603141) for background on liprins.(supplied by OMIM) UniProtKB/Swiss-Prot: LIPB2_HUMAN, Q8ND30 Function : May regulate the disassembly of focal adhesions. Did not bind receptor-like tyrosine phosphatases type 2A
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Genomic Viewsfor PPFIBP2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PPFIBP2 gene promoter: Chx10 Max1 c-Myc MEF-2A FOXC1 USF1 NF-E2 p45 NF-E2 E47 E2F-1 Other transcription factors Search SABiosciences Chromatin IP Primers for PPFIBP2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for PPFIBP2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11p15.4 Ensembl cytogenetic band: 11p15.4 HGNC cytogenetic band: 11p15.4 PPFIBP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P007193: view genomic region
(about GC identifiers )
Start:
7,193,533 bp from pter
End:
7,333,709 bp from pter
Size:
140,177 bases
Orientation:
plus strand
1 alternative location : Chr 11+ 7,535,001-7,674,989
RefSeq DNA sequence: NC_000011.9 NT_009237.18
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Proteinsfor PPFIBP2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: LIPB2_HUMAN, Q8ND30 (See
protein sequence )Recommended Name: Liprin-beta-2 Size : 876 amino acids; 98544 Da
Subunit : Forms homodimers and heterodimers (By similarity)
Secondary accessions : O75337 Q8WW26Explore the universe of human proteins at neXtProt for PPFIBP2: NX_Q8ND30 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_003612.2 ENSEMBL proteins: ENSP00000299492 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
About this table
PPFIBP2 for ontologies About GeneDecksing Antibodies for PPFIBP2: Assays for PPFIBP2:
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Protein
Domains/ Familiesfor PPFIBP2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PPFIBP2 for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry Q8ND30 ProtoNet protein and cluster: Q8ND30
3 Blocks protein families : IPB001660 Sterile alpha motif SAM IPB004191 Tn916 integrase IPB011510 Sterile alpha motif homology 2 UniProtKB/Swiss-Prot: LIPB2_HUMAN, Q8ND30 Domain : The N-terminal coiled coil regions mediate homodimerization preferentially and heterodimerization typebeta/beta. The C-terminal, non-coiled coil regions mediate heterodimerization type beta/alpha (By similarity) Similarity : Belongs to the liprin family. Liprin-beta subfamilySimilarity : Contains 3 SAM (sterile alpha motif) domains
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Gene Functionfor PPFIBP2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: LIPB2_HUMAN, Q8ND30 Function : May regulate the disassembly of focal adhesions. Did not bind receptor-like tyrosine phosphatases type 2A
4 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
PPFIBP2 for ontologies About GeneDecksing
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Pathways & Interactionsfor PPFIBP2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for PPFIBP2 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PPFIBP2 4 Interacting proteins for PPFIBP2 (Q8ND30 1 , 2 ) via UniProtKB, MINT, and/or STRING About this table 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007154 cell communication
NAS -- GO:0015074 DNA integration
IEA --
About this table
PPFIBP2 for ontologies About GeneDecksing
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Drugs & Compoundsfor PPFIBP2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for PPFIBP2
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Transcriptsfor PPFIBP2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for PPFIBP2 gene: NM_003621.2
Additional cDNA sequence: AF034803.1 AK001131.1 AK025337.1 AK097449.1 AK293669.1 AK294554.1 AK296718.1 AK301978.1 AK308398.1 AK311048.1 AL834426.1 BC021026.1 BC021714.1 CR749258.1
20 DOTS entries : DT.452999 DT.100009989 DT.100787630 DT.91650802 DT.100787632 DT.95307781 DT.100787633 DT.100787637
DT.425417 DT.95145072 DT.120748187 DT.100809764 DT.120748153 DT.120748231 DT.40190437 DT.120748192 DT.75159030 DT.92027374 DT.120748173 DT.95195773 24/205 AceView cDNA sequences (see all 205 ):
CD109093 BX109147 AI868399 BF726125 BU624376 AA877353 AL834426 AA331841 AI057485 CB161350 AI692180 BF726124 CD171856 CB129260 CD364931 BM682279 AI149790 AI805241 AA583006 CA503137 AW576293 R72196 AU146640 AA815324
highest scoring ESTs for PPFIBP2 :AF034803 AA131100 AA502582 AA551750 AA583006 AA598564 AA760889 AA781767 AA804778 AA815324 Unigene Cluster for PPFIBP2:
PTPRF interacting protein, binding protein 2 (liprin beta 2) Hs.655714 [show with all ESTs ] Unigene Representative Sequence: NM_003621 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for PPFIBP2 (see all 12 ) ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ SP1 :                                                 -     SP2 :       -   -   -             -       -   -                       SP3 :         -   -             -                               SP4 :                                                     SP5 :       -   -                                            
ExUns: 19 ^ 20 ^ 21a · 21b ^ 22a · 22b ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28a · 28b ^ 29 ^ 30a · 30b ^ 31 SP1 :           -             -             SP2 :                                   SP3 :                                   SP4 :                                   SP5 :                                  
About this scheme ECgene alternative splicing isoforms for PPFIBP2 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000299492 (uc010rbd.1 uc010rbb.1 uc001mfk.1 uc001mfj.3 uc010rbc.1 uc010rbe.1 uc001mfl.3 uc009yfj.1 )
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Expression for PPFIBP2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section PPFIBP2 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching PPFIBP2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
41709_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
AF034803
1.00
1.00
1.00
1
212841_s_at2 , 3
U133-A
1
1.00
1.00
--
--
AI692180
0.80
1.00
0.91
1
212841_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
PPFIBP2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GACACTCCCA SOURCE GeneReport for Unigene cluster: Hs.655714 Expression variation in blood from EXPOLDB for PPFIBP2
UniProtKB/Swiss-Prot: LIPB2_HUMAN, Q8ND30 Tissue specificity : Widely expressed
SABiosciences Custom PCR Arrays for PPFIBP2
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Orthologsfor PPFIBP2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for PPFIBP2 gene from 5/10 species (see all 10 )
About this table Species with no ortholog for PPFIBP2 ENSEMBL Gene Tree for PPFIBP2 (if available)
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Paralogsfor PPFIBP2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for PPFIBP2 gene PPFIBP1 2 PPFIA2 2 PPFIA4 2 KAZ 2 PPFIA3 2 PPFIA1 2
PPFIBP2 for paralogs About GeneDecksing
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Genomic Variantsfor PPFIBP2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 11 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for PPFIBP2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PPFIBP2: --
QIAGEN SeqTarget long-range PCR primers for resequencing PPFIBP2
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Disorders & Mutationsfor PPFIBP2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PPFIBP2 for disorders About GeneDecksing
OMIM: 603142 Human Genome Epidemiology (HuGE) Navigator: PPFIBP2 (2 documents) Export disorders and mutations for PPFIBP2 gene to outside databases
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Medical Newsfor PPFIBP2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor PPFIBP2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/13 PubMed articles for PPFIBP2 gene, integrated from 7 sources (see all 13 ): (articles sorted by number of sources associating them with PPFIBP2) Liprins, a family of LAR transmembrane protein-tyrosine phosphatase- interacting proteins. (PubMed id 9624153) 1 , 2 , 3 Serra-Pages C.... Streuli M. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Novel breast cancer risk alleles and interaction with ionizing radiation among U.S. radiologic technologists. (PubMed id 20095854) 1 Bhatti P....Sigurdson A.J. (2010) Protein microarray analysis identifies human cellular prion protein interactors. (PubMed id 18482256) 1 Satoh J....Tabunoki H. (2009) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 1 Barbe L....Andersson-Svahn H. (2008) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811) 2 Taylor T.D....Sakaki Y. (2006) Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514) 1 Rual J.F....Vidal M. (2005)
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External Searches for PPFIBP2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PPFIBP2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PPFIBP2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing PPFIBP2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PPFIBP2 gene: Search GeneIP for patents involving PPFIBP2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PPFIBP2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for PPFIBP2
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Summaries for PPFIBP2
Transcripts for PPFIBP2
Variants for PPFIBP2
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