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Aliases & Descriptionsfor PPP1R15B gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions protein phosphatase 1, regulatory (inhibitor) subunit 15B1 2 FLJ147441 2 CREP2 5 protein phosphatase 1 regulatory subunit 15B2
Export aliases for PPP1R15B gene to outside databases Previous GC identifers: GC01M202101 GC01M199833 GC01M200736 GC01M201552 GC01M201549 GC01M201104 GC01M202639 GC01M204372
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Summariesfor PPP1R15B gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PPP1R15B : PPP1R15B promotes dephosphorylation of the transcription initiation factor EIF2-alpha (EIF2S1; MIM 603907) through recruitment of protein phosphatase-1 (PP1) catalytic subunits (see MIM 176875) (Harding et al., 2009 (PubMed 19181853)).(supplied by OMIM) UniProtKB/Swiss-Prot: PR15B_HUMAN, Q5SWA1 Function : Maintains low levels of EIF2S1 phosphorylation in unstressed cells by promoting its dephosphorylation by PP1(By similarity)
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Genomic Viewsfor PPP1R15B gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PPP1R15B gene promoter: oct-B2 Oct-B1 POU2F2C POU2F2B oct-B3 POU2F2 (Oct-2.1) POU2F2 POU2F1 CP1A NF-Y Other transcription factors Search SABiosciences Chromatin IP Primers for PPP1R15B Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for PPP1R15B
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1q32.1 Ensembl cytogenetic band: 1q32.1 HGNC cytogenetic band: 1q32.1 PPP1R15B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M175537: view genomic region
(about GC identifiers )
Start:
175,537,638 bp from pter
End:
175,546,091 bp from pter
Size:
8,454 bases
Orientation:
minus strand
1 alternative location : Chr 1- 204,372,515-204,380,919
RefSeq DNA sequence: NC_000001.10 NT_004487.19
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Proteinsfor PPP1R15B gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: PR15B_HUMAN, Q5SWA1 (See
protein sequence )Recommended Name: Protein phosphatase 1 regulatory subunit 15B Size : 713 amino acids; 79152 Da
Subunit : Part of a complex containing PPP1R15B, PP1 and NCK1/2 (By similarity). Interacts with PP1
Miscellaneous : The phosphatase activity of the PPP1R15B-PP1 complex toward EIF2S1 is specifically inhibited bySalubrinal, a drug that protects cells from endoplasmic reticulum stress
Secondary accessions : Q53GQ4 Q658M2 Q6P156 Q96SN1Explore the universe of human proteins at neXtProt for PPP1R15B: NX_Q5SWA1 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_116222.3 ENSEMBL proteins: ENSP00000356156 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0000164 protein phosphatase type 1 complex
IEA --
About this table
PPP1R15B for ontologies About GeneDecksing Antibodies for PPP1R15B: Assays for PPP1R15B:
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Protein
Domains/ Familiesfor PPP1R15B gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PPP1R15B for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q5SWA1 ProtoNet protein and cluster: Q5SWA1
UniProtKB/Swiss-Prot: PR15B_HUMAN, Q5SWA1 Similarity : Belongs to the PPP1R15 family
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Gene Functionfor PPP1R15B gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: PR15B_HUMAN, Q5SWA1 Function : Maintains low levels of EIF2S1 phosphorylation in unstressed cells by promoting its dephosphorylation by PP1(By similarity)
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004722 protein serine/threonine phosphatase activity
IEA --
About this table
PPP1R15B for ontologies About GeneDecksing Animal Models: 8 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ppp1r15b) :
PPP1R15B for phenotypes About GeneDecksing
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Pathways & Interactionsfor PPP1R15B gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Pathway-Focused PCR Array including PPP1R15B : PAHS-3401A Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PPP1R15B 1 Interacting protein for PPP1R15B (Q5SWA1 2 ) via UniProtKB, MINT, and/or STRING About this table 5 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
PPP1R15B for ontologies About GeneDecksing
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Drugs & Compoundsfor PPP1R15B gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for PPP1R15B
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Transcriptsfor PPP1R15B gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for PPP1R15B gene: NM_032833.3
Additional cDNA sequence: AK023680.1 AK027650.1 AK222877.1 AK303535.1 AK316092.1 AL833746.1 AY007107.1 BC065280.1 CR595060.1
15 DOTS entries : DT.99947727 DT.116650 DT.91756981 DT.100808754 DT.91756977 DT.99999932 DT.100808750 DT.91756973
DT.91756979 DT.95237744 DT.91756982 DT.95237730 DT.100686076 DT.100808752 DT.95237725 24/290 AceView cDNA sequences (see all 290 ):
BG056420 BQ221596 CA442888 AA878183 CA308480 AI219802 BP364190 BF592980 CA397898 BU617635 CB155963 BC065280 AK023680 BG567959 AW070743 BP359001 CK903904 AL705093 AA813825 AW088834 AA459426 AA369245 AA190705 BI962677
highest scoring ESTs for PPP1R15B :R59635 AA158646 AA158659 AA188594 AA190705 AA337480 AA382831 AA459426 AI078825 AI082300 Unigene Cluster for PPP1R15B:
Protein phosphatase 1, regulatory (inhibitor) subunit 15B Hs.304376 [show with all ESTs ] Unigene Representative Sequence: NM_032833 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000367188 (uc001hav.3 )
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Expression for PPP1R15B gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section PPP1R15B expression in normal and diseased human tissues 1 / 2 / 3
6 probe-sets matching PPP1R15B gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
78776_at2 , 3
U95-D
1
1.00
1.00
0.24
1.25
AA188594
0.80
1.00
0.91
1
87401_at2 , 3
U95-E
1
1.00
1.00
0.75
0.98
R59635
1.00
1.00
1.00
1
54819_r_at2 , 3
U95-B
1
0.69
1.00
0.51
0.57
AI720898
0.80
1.00
0.91
1
60485_at2 , 3
U95-C
1
0.56
1.00
0.85
1.22
AI659699
0.60
1.00
0.82
1
224692_at2 , 3
U133-B
1
0.64
1.00
--
--
BF796046
0.40
1.00
0.76
1
224692_at2
U133Plus2
1
0.64
1.00
--
--
--
--
--
--
--
About this table
PPP1R15B for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAAAAGGCTT SOURCE GeneReport for Unigene cluster: Hs.304376 SABiosciences Expression via Pathway-Focused PCR Array including PPP1R15B : PAHS-3401A
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Orthologsfor PPP1R15B gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for PPP1R15B gene from 5 species
About this table Species with no ortholog for PPP1R15B ENSEMBL Gene Tree for PPP1R15B (if available)
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Paralogsfor PPP1R15B gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor PPP1R15B gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 1 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for PPP1R15B (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PPP1R15B: --
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Disorders & Mutationsfor PPP1R15B gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PPP1R15B for disorders About GeneDecksing
OMIM: 613257 Export disorders and mutations for PPP1R15B gene to outside databases
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Medical Newsfor PPP1R15B gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor PPP1R15B gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/11 PubMed articles for PPP1R15B gene, integrated from 7 sources (see all 11 ): (articles sorted by number of sources associating them with PPP1R15B) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Regulator-driven functional diversification of protein phosphatase-1 in eukaryotic evolution. (PubMed id 11948623) 1 , 3 Ceulemans H....Bollen M. (2002) Ppp1r15 gene knockout reveals an essential role for t ranslation initiation factor 2 alpha (eIF2alpha) dephosphorylation in mammalian development. (PubMed id 19181853) 1 Harding H.P....Ron D. (2009) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 2 Gregory S.G.... Bentley D.R. (2006) A selective inhibitor of eIF2alpha dephosphorylation protects cells from ER stress. (PubMed id 15705855) 2 Boyce M....Yuan J. (2005) Functional proteomics mapping of a human signaling pathway. (PubMed id 15231748) 1 Colland F....Gauthier J.M. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Construction and characterization of a full length-enriched and a 5'- end-enriched cDNA library. (PubMed id 9373149) 1 Suzuki Y.... Sugano S. (1997)
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External Searches for PPP1R15B gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PPP1R15B gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PPP1R15B gene
(According to HUGE )
About This Section --
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Specialized Databases showing PPP1R15B gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PPP1R15B gene: Search GeneIP for patents involving PPP1R15B GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PPP1R15B gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
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Aliases for PPP1R15B
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