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Aliases & Descriptionsfor PROM2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions prominin 21 2 prominin-22 Prominin-like protein 22 3 prominin-related protein2 PROML22 3 MGC1387142 hPROML22 3 PROM-23
Export aliases for PROM2 gene to outside databases Previous GC identifers: GC02P094373 GC02P095408 GC02P095424 GC02P095362 GC02P095303 GC02P095942
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Summariesfor PROM2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PROM2 : This gene encodes a member of the prominin family of pentaspan membrane glycoproteins. The encoded protein localizes to basal epithelial cells and may be involved in the organization of plasma membrane microdomains. Alternative splicing results in multiple transcript variants. (provided by RefSeq)
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Genomic Viewsfor PROM2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PROM2 gene promoter: GR-alpha JunD AP-1 JunB c-Fos c-Jun Fra-1 LCR-F1 AhR Arnt Other transcription factors Search SABiosciences Chromatin IP Primers for PROM2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q11.1 Ensembl cytogenetic band: 2q11.1 HGNC cytogenetic band: 2q11.1 PROM2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P089982: view genomic region
(about GC identifiers )
Start:
89,967,276 bp from pter
End:
89,984,207 bp from pter
Size:
16,932 bases
Orientation:
plus strand
1 alternative location : Chr 2+ 95,940,201-95,957,056
RefSeq DNA sequence: NC_000002.11 NT_022171.15
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Proteinsfor PROM2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: PROM2_HUMAN, Q8N271 (See
protein sequence )Recommended Name: Prominin-2 precursor Size : 834 amino acids; 91883 Da
Subunit : Binds cholesterol (By similarity)
Subcellular location : Apical cell membrane; Multi-pass membrane protein (By similarity). Basolateral cell membrane;Multi-pass membrane protein (By similarity). Cell projection, microvillus membrane; Multi-pass membrane protein (By similarity). Cell projection, cilium membrane; Multi-pass membrane protein (By similarity). Note=Colocalizes with PROM1. Associates with membrane in a cholesterol-dependent manner. Localizes to the apical and basolateral membranes of epithelial cells (By similarity)
Sequence caution : Sequence=BAC03657.1; Type=Erroneous initiation;
Secondary accessions : A8K2V1 Q2HIX6 Q8NB84 Q8TAE2Alternative splicing : 3 isoforms : Q8N271-1 Q8N271-2 Q8N271-3 Explore the universe of human proteins at neXtProt for PROM2: NX_Q8N271 Post-translational modifications:
Glycosylated (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001159449.1 NP_001159450.1 NP_653308.2 ENSEMBL proteins: ENSP00000385716 ENSP00000402753 ENSP00000318270 ENSP00000318520 Human Recombinant Proteins 5/7 Gene Ontology (GO) cellular component terms (GO ID links to tree view) (see all 7 ):
About this table
PROM2 for ontologies About GeneDecksing Antibodies for PROM2: Assays for PROM2:
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Protein
Domains/ Familiesfor PROM2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PROM2 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q8N271 ProtoNet protein and cluster: Q8N271
UniProtKB/Swiss-Prot: PROM2_HUMAN, Q8N271 Similarity : Belongs to the prominin family
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Gene Functionfor PROM2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section 1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004623 phospholipase A2 activity
-- --
About this table
PROM2 for ontologies About GeneDecksing
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Pathways & Interactionsfor PROM2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for PROM2 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PROM2 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006644 phospholipid metabolic process
-- -- GO:0016042 lipid catabolic process
-- --
About this table
PROM2 for ontologies About GeneDecksing
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Drugs & Compoundsfor PROM2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for PROM2
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Transcriptsfor PROM2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for PROM2 gene (3 alternative transcripts): NM_001165977.1 NM_001165978.1 NM_144707.2
Additional cDNA sequence: AF245303.1 AF245304.1 AK290366.1 AK313267.1 AY358377.1 BC025736.1 BC113877.1 BC114525.1
9 DOTS entries : DT.100754571 DT.75101526 DT.87015763 DT.100019216 DT.86838212 DT.95363439 DT.423392 DT.95122723
DT.91742528 24/49 AceView cDNA sequences (see all 49 ):
AI762122 AA862642 AI281031 AK091175 BM768369 AL040582 AF245304 AA468976 BC025736 BM980816 AI346113 AX746828 AI702901 AK091408 NM_144707 AI792608 AI929095 AI928825 BP352952 AI932748 AW292801 AW513008 AI554512 CB146114
highest scoring ESTs for PROM2 :AI733800 AF245303 AF245304 AI262848 AI346113 AI346501 AI702901 AI928825 AI932748 AI983995 Unigene Cluster for PROM2:
Prominin 2 Hs.469313 [show with all ESTs ] Unigene Representative Sequence: NM_001165978 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for PROM2 (see all 8 ) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b · 11c ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ SP1 :             -                 -                         SP2 :             -                 -                         SP3 :             -                 -                         SP4 :                                                 -     SP5 :           -   -   -   -   -                                  
ExUns: 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 SP1 :               -   -       SP2 :               -   -   -     SP3 :                       SP4 :               -         SP5 :                      
About this scheme ECgene alternative splicing isoforms for PROM2 11 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000487138 (uc002sul.2 ) ENST00000403131 ENST00000477767 ENST00000495540 ENST00000463580 ENST00000431567 (uc002suj.2 ) ENST00000317620 (uc002sum.2 )ENST00000478295 ENST00000497110 ENST00000317668 (uc002suh.1 uc002sui.2 uc002suk.2 )ENST00000462029
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Expression for PROM2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section PROM2 expression in normal and diseased human tissues 1 / 2 / 3
7 probe-sets matching PROM2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
77516_r_at2 , 3
U95-E
1
1.00
1.00
0.91
1.11
AI983995
0.80
1.00
0.91
1
80590_at2 , 3
U95-D
1
0.88
1.00
-0.38
0.91
AI929095
0.60
1.00
0.82
1
82818_at2 , 3
U95-E
1
0.75
1.00
0.95
1.00
AI733800
1.00
1.00
1.00
1
239528_at2 , 3
U133-B
1
0.82
1.00
--
--
BE513006
0.60
1.00
0.82
1
1562378_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
1552797_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
239528_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
About this table
PROM2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.469313 UniProtKB/Swiss-Prot: PROM2_HUMAN, Q8N271 Tissue specificity : Present in saliva within small membrane particles (at protein level). Expressed in kidney,prostate, trachea, esophagus, salivary gland, thyroid gland, mammary gland adrenal gland, placenta, stomach, spinal cord and liver. In submucosal tumor, expressed in spindle-shaped or stellate stromal cells. Expressed in prostate cancer cell lines
SABiosciences Custom PCR Arrays for PROM2
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Orthologsfor PROM2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for PROM2 gene from 5/7 species (see all 7 )
About this table Species with no ortholog for PROM2 ENSEMBL Gene Tree for PROM2 (if available)
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Paralogsfor PROM2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for PROM2 gene PROM1 2
PROM2 for paralogs About GeneDecksing
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Genomic Variantsfor PROM2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 2 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for PROM2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PROM2: --
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Disorders & Mutationsfor PROM2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PROM2 for disorders About GeneDecksing 1 Novoseek disease relationship for PROM2 gene
About this table Export disorders and mutations for PROM2 gene to outside databases
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Medical Newsfor PROM2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor PROM2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/17 PubMed articles for PROM2 gene, integrated from 7 sources (see all 17 ): (articles sorted by number of sources associating them with PROM2) Characterization of prominin-2, a new member of the prominin family of pentaspan membrane glycoproteins. (PubMed id 12514187) 1 , 2 , 3, 7 Fargeas C.A.... Corbeil D. (2003) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Robust expression of Prominin-2 all along the adult male reproductive system and urinary bladder. (PubMed id 18536929) 1 , 7 Jaszai J....Corbeil D. (2008) Prominin-2 is a novel marker of distal tubules and co llecting ducts of the human and murine kidney. (PubMed id 20333396) 1 , 7 JA!szai J....Corbeil D. (2010) Differential expression of prominin-1 (CD133) and prominin-2 in major cephalic exocrine glands of adult mice. (PubMed id 17874118) 2 , 7 Jaszai J....Corbeil D. (2007) Effect of CD133/prominin-1 antisense oligodeoxynucleo tide on in vitro growth characteristics of Huh-7 human hepatocarcinoma cells an d U251 human glioma cells. (PubMed id 19724856) 1 , 7 Yao J....Wu G. (2009) An ultrastructural and immunohistochemical study of a combined submucosal granular cell tumor and lipoma of the colon showing a unique nodule-in-nodule structure: putative implication of CD34 or prominin-2-positive stromal cells in its histopathogenesis. (PubMed id 16673119) 2 Mori T.... Yamazaki K. (2006) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) Gene expression profiling separates chromophobe renal cell carcinoma from oncocytoma and identifies vesicular transport and cell jun ction proteins as differentially expressed genes. (PubMed id 17145811) 1 Rohan S....Chen Y.T. (2006)
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External Searches for PROM2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PROM2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PROM2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing PROM2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PROM2 gene: Search GeneIP for patents involving PROM2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PROM2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for PROM2
ELISAs and CLIAs for PROM2
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Function for PROM2
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