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Aliases & Descriptionsfor QSOX2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions quiescin Q6 sulfhydryl oxidase 21 2 Quiescin Q6-like protein 12 3 SOXN1 2 3 5 QSCN6L12 3 DKFZp762A20131 2 sulfhydryl oxidase 22 quiescin Q6-like 11 2 EC 1.8.3.23 Neuroblastoma-derived sulfhydryl oxidase2 3
Export aliases for QSOX2 gene to outside databases Previous GC identifers: GC09M138239 GC09M137879 GC09M139098
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Summariesfor QSOX2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for QSOX2 : QSOX2 is a member of the sulfhydryl oxidase/quiescin-6 (Q6) family (QSOX1; MIM 603120) that regulates the sensitization of neuroblastoma cells for IFN-gamma (IFNG; MIM 147570)-induced cell death (Wittke et al., 2003 (PubMed 14633699)).(supplied by OMIM) UniProtKB/Swiss-Prot: QSOX2_HUMAN, Q6ZRP7 Function : Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reductionof oxygen to hydrogen peroxide. May contribute to disulfide bond formation in a variety of secreted proteins. Also seems to play a role in regulating the sensitization of neuroblastoma cells for interferon-gamma-induced apoptosis
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Genomic Viewsfor QSOX2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for QSOX2 Other transcription factors Search SABiosciences Chromatin IP Primers for QSOX2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for QSOX2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9q34.3 Ensembl cytogenetic band: 9q34.3 HGNC cytogenetic band: 9q34.3 QSOX2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M108562: view genomic region
(about GC identifiers )
Start:
108,562,182 bp from pter
End:
108,601,716 bp from pter
Size:
39,535 bases
Orientation:
minus strand
2 alternative locations : Chr 9-,PATCHES 139,137,322-139,137,687 Chr 9- 139,098,179-139,137,687
RefSeq DNA sequence: NC_000009.11 NT_019501.13
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Proteinsfor QSOX2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: QSOX2_HUMAN, Q6ZRP7 (See
protein sequence )Recommended Name: Sulfhydryl oxidase 2 precursor Size : 698 amino acids; 77529 Da
Cofactor : Binds 1 FAD per subunit (Potential)
Subcellular location : Membrane; Single-pass membrane protein. Secreted. Cell membrane; Single-pass membrane protein(Potential). Nucleus membrane; Single-pass membrane protein (Potential). Note=Seems to be predominantly targeted to the nuclear and outer plasma membrane
Sequence caution : Sequence=BAC87262.1; Type=Erroneous initiation; Sequence=CAC85331.1; Type=Frameshift; Positions=354,369, 616, 618;
Secondary accessions : A2CEE0 A6NLB0 Q5TB37 Q7Z7B6 Q86VV7 Q8N3G2Explore the universe of human proteins at neXtProt for QSOX2: NX_Q6ZRP7 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_859052.3 ENSEMBL proteins: ENSP00000374122 ENSP00000351536 ENSP00000389089 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
QSOX2 for ontologies About GeneDecksing Antibodies for QSOX2: Assays for QSOX2:
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Protein
Domains/ Familiesfor QSOX2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
QSOX2 for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry Q6ZRP7 ProtoNet protein and cluster: Q6ZRP7
2 Blocks protein families : IPB006662 Thioredoxin type domain IPB006863 Erv1/Alr UniProtKB/Swiss-Prot: QSOX2_HUMAN, Q6ZRP7 Similarity : Belongs to the quiescin-sulfhydryl oxidase (QSOX) familySimilarity : Contains 1 ERV/ALR sulfhydryl oxidase domainSimilarity : Contains 1 thioredoxin domain
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Gene Functionfor QSOX2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: QSOX2_HUMAN, Q6ZRP7 Function : Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reductionof oxygen to hydrogen peroxide. May contribute to disulfide bond formation in a variety of secreted proteins. Also seems to play a role in regulating the sensitization of neuroblastoma cells for interferon-gamma-induced apoptosis Catalytic activity : 4 R'C(R)SH + O(2) = 2 R'C(R)S-S(R)CR' + 2 H(2)OEnzyme Number (IUBMB): EC 1.8.3.2
2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0016491 oxidoreductase activity
IEA -- GO:0016972 thiol oxidase activity
IEA --
About this table
QSOX2 for ontologies About GeneDecksing
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Pathways & Interactionsfor QSOX2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for QSOX2 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for QSOX2 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0045454 cell redox homeostasis
IEA -- GO:0055114 oxidation-reduction process
IEA --
About this table
QSOX2 for ontologies About GeneDecksing
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Drugs & Compoundsfor QSOX2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
QSOX2 for compounds About GeneDecksing Browse Tocris compounds for QSOX2 3 Novoseek chemical compound relationships for QSOX2 gene
About this table
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Transcriptsfor QSOX2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for QSOX2 gene: NM_181701.3
Additional cDNA sequence: AJ318051.1 AJ420461.1 AK128077.1 AK128750.1 AL834369.1 BC047604.2 CR601649.1
6 DOTS entries : DT.110458 DT.97836908 DT.97775695 DT.75100956 DT.40213602 DT.121194112
24/91 AceView cDNA sequences (see all 91 ):
BE349598 BI492379 H08428 AI028313 CR601649 AI742021 AI309245 AI753180 AI280985 BE875636 BQ187181 AA514465 AA493143 AI304528 BQ894697 AI554061 AW662560 BG745598 BQ185744 BG180984 BM699256 BQ218767 BQ894531 AW873348 Unigene Cluster for QSOX2:
Quiescin Q6 sulfhydryl oxidase 2 Hs.657864 [show with all ESTs ] Unigene Representative Sequence: AJ318051 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for QSOX2 ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b SP1 :               -   -           -     -       SP2 :                 -           -     -       SP3 :                           -     -       SP4 :                                     SP5 :       -   -       -   -                    
About this scheme ECgene alternative splicing isoforms for QSOX2 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000389471 ENST00000358701 (uc010nbi.2 ) ENST00000455222
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Expression for QSOX2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section QSOX2 expression in normal and diseased human tissues 1 / 2
6 probe-sets matching QSOX2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
61673_at2
U95-C
1
1.00
1.00
0.94
1.26
--
--
--
--
--
75405_at2
U95-E
1
1.00
1.00
0.58
0.75
--
--
--
--
--
227146_at2
U133-B
1
1.00
1.00
--
--
--
--
--
--
--
235239_at2
U133-B
1
0.82
1.00
--
--
--
--
--
--
--
227146_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
235239_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
About this table
QSOX2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GAAATGTCAG SOURCE GeneReport for Unigene cluster: Hs.657864 UniProtKB/Swiss-Prot: QSOX2_HUMAN, Q6ZRP7 Tissue specificity : Expressed in pancreas, brain, placenta, kidney, heart and fetal tissues. Weakly expressed in lung,liver and skeletal muscles
SABiosciences Custom PCR Arrays for QSOX2
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Orthologsfor QSOX2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for QSOX2 gene from 5/9 species (see all 9 )
About this table Species with no ortholog for QSOX2 ENSEMBL Gene Tree for QSOX2 (if available)
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Paralogsfor QSOX2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for QSOX2 gene QSOX1 2
QSOX2 for paralogs About GeneDecksing
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Genomic Variantsfor QSOX2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 9 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for QSOX2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for QSOX2: --
QIAGEN SeqTarget long-range PCR primers for resequencing QSOX2
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Disorders & Mutationsfor QSOX2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
QSOX2 for disorders About GeneDecksing
OMIM: 612860 Human Genome Epidemiology (HuGE) Navigator: QSOX2 (1 document)Export disorders and mutations for QSOX2 gene to outside databases
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Medical Newsfor QSOX2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor QSOX2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/41 PubMed articles for QSOX2 gene, integrated from 7 sources (see all 41 ): (articles sorted by number of sources associating them with QSOX2) Neuroblastoma-derived sulfhydryl oxidase, a new member of the sulfhydryl oxidase/quiescin 6 family, regulates sensitization to interferon gamma-induced cell death in human neuroblastoma cells. (PubMed id 14633699) 1 , 2 , 7 Wittke I....Schwab M. (2003) Sulfhydryl oxidases: emerging catalysts of protein disulfide bond formation in eukaryotes. (PubMed id 12176051) 1 , 3, 7 Thorpe C....Coppock D.L. (2002) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 1 , 2 Humphray S.J.... Dunham I. (2004) A genome-wide association study in 19 633 Japanese su bjects identified LHX3-QSOX2 and IGF1 as adult height loci. (PubMed id 20189936) 1 Okada Y....Kamatani N. (2010) Hundreds of variants clustered in genomic loci and bi ological pathways affect human height. (PubMed id 20881960) 1 Lango Allen H....Hirschhorn J.N. (2010 Oct 14) Large-scale proteomics analysis of the human kinome. (PubMed id 19369195) 2 Oppermann F.S.... Daub H. (2009) Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976) 2 Daub H.... Mann M. (2008) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 Gerhard D.S....Malek J. (2004)
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External Searches for QSOX2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing QSOX2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing QSOX2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing QSOX2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for QSOX2 gene: Search GeneIP for patents involving QSOX2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor QSOX2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for QSOX2
ELISAs and CLIAs for QSOX2
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