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RAB15 Gene

protein-coding   GIFtS: 45

GC14M045582
RAB15, member RAS onocogene family
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
RAB15, member RAS onocogene family1 2
ras-related protein Rab-152
RAB15, member RAS oncogene family2

External Ids:    HGNC: 201501   Entrez Gene: 3762672   Ensembl: ENSG000001399987   UniProtKB: P591903   

Export aliases for RAB15 gene to outside databases

Previous GC identifers: GC14M059207 GC14M063402 GC14M064482 GC14M065412


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: RAB15_HUMAN, P59190
Function: May act in concert with RAB3A in regulating aspects of synaptic vesicle membrane flow within the nerve
terminal (By similarity)

Gene Wiki entry for RAB15

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RAB15 gene promoter:
         CHOP-10   C/EBPalpha   Chx10   Nkx2-2   SRF   LUN-1   Lmo2   TGIF   RREB-1   AREB6   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for RAB15

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for RAB15 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q23.3   Ensembl cytogenetic band:  14q23.3   HGNC cytogenetic band: 14q23.2

RAB15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAB15 gene location

GeneLoc gene densities for chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M045582:  view genomic region     (about GC identifiers)

Start:
45,582,156 bp from pter
End:
45,608,228 bp from pter
Size:
26,073 bases
Orientation:
minus strand

1 alternative location:
Chr14- 65,412,532-65,438,875     
RefSeq DNA sequence:
NC_000014.8  NT_026437.12  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: RAB15_HUMAN, P59190 (See protein sequence)
Recommended Name: Ras-related protein Rab-15  
Size: 212 amino acids; 24391 Da
Subunit: The GTP bound form of RAB15 interacts with REP15
Subcellular location: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential)
Secondary accessions: Q86TX7 Q8IW89
Alternative splicing: 2 isoforms:  P59190-1   P59190-2   

Explore the universe of human proteins at neXtProt for RAB15: NX_P59190 

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_941959.1  

    ENSEMBL proteins: 
    ENSP00000267512 ENSP00000393414 


    Human Recombinant Proteins 
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    2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular ----
    GO:0005886 plasma membrane IEA--
    About this table

    RAB15 for ontologies           About GeneDecksing



    Antibodies for RAB15: 
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    Uscn ELISAs and CLIAs for RAB15 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RAB15 for domains           About GeneDecksing

    5 InterPro domains/families:
     IPR001806 Ras_GTPase
     IPR005225 Small_GTP-bd
     IPR003579 GTPase_Rab
     IPR020851 Small_GTPase
     IPR013753 Ras

    Graphical View of Domain Structure for InterPro Entry P59190

    ProtoNet protein and cluster: P59190

    4 Blocks protein families:
    IPB001806 Transforming protein P21 RAS signature
    IPB002041 GTP-binding nuclear protein Ran
    IPB003577 Ras small GTPase
    IPB003578 Ras small GTPase


    UniProtKB/Swiss-Prot: RAB15_HUMAN, P59190
    Similarity: Belongs to the small GTPase superfamily. Rab family


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    UniProtKB/Swiss-Prot: RAB15_HUMAN, P59190
    Function: May act in concert with RAB3A in regulating aspects of synaptic vesicle membrane flow within the nerve
    terminal (By similarity)

    Inhib.
    RNA:
        
    Browse for Gene Knock-down Tools from Millipore
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    Sigma-Aldrich esiRNA and siRNA for RAB15
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    miRNA:Sigma-Aldrich microRNA Mimics for RAB15
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of RAB15 
    8/11 SABiosciences Assays for microRNAs that regulate RAB15 (see all 11):
    hsa-miR-1178 hsa-miR-30c hsa-miR-767-3p hsa-miR-30d hsa-miR-766 hsa-miR-214 hsa-miR-30a hsa-miR-101

    Gene
    Editing:
    Browse CompoZr Knockout ZFN at Sigma-Aldrich 

    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    Browse iPSC Reprogramming Factors at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: RAB15
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: RAB15
    OriGene untagged cDNA clones in CMV expression vector: RAB15
    OriGene 3'-UTR clone: RAB15 
    Browse MicroRNA Expression Plasmids 
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    Browse Sino Biological Human cDNA Clones

    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for RAB15 

    5/6 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 6):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166 nucleotide binding IEA--
    GO:0003924 GTPase activity ----
    GO:0005515 protein binding IEA--
    GO:0005524 ATP binding ----
    GO:0005525 GTP binding IEA--
    About this table

    RAB15 for ontologies           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section


    RAB15 for pathways           About GeneDecksing

    2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for  RAB15
        Glutathione Metabolism
    Arachidonic Acid Metabolism

        SABiosciences Custom Pathway-Focused PCR Arrays for RAB15 

        Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for RAB15
        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RAB15

    5/6 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 6):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355 regulation of transcription, DNA-dependent ----
    GO:0006886 intracellular protein transport ----
    GO:0006913 nucleocytoplasmic transport ----
    GO:0007165 signal transduction ----
    GO:0007264 small GTPase mediated signal transduction IEA--
    About this table

    RAB15 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section
    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RAB15


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich esiRNA and siRNA for RAB15
    Sigma-Aldrich shRNA for RAB15
    OriGene 29mer shRNA kits in GFP-retroviral vector: RAB15
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    OriGene basic RS shRNA: RAB15
    OriGene siRNA: RAB15
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of RAB15 
    miRNA: Sigma-Aldrich microRNA Mimics for RAB15
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of RAB15 
    8/11 SABiosciences Assays for microRNAs that regulate RAB15 (see all 11):
    hsa-miR-1178 hsa-miR-30c hsa-miR-767-3p hsa-miR-30d hsa-miR-766 hsa-miR-214 hsa-miR-30a hsa-miR-101
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: RAB15
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: RAB15
    OriGene untagged cDNA clones in CMV expression vector: RAB15
    OriGene 3'-UTR Clone: RAB15 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for RAB15 
    Primers: OriGene genome-wide validated SYBR primer pairs: RAB15
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for RAB15: PPH23235A

    REFSEQ mRNAs for RAB15 gene: 

    NM_198686.2  

    Additional cDNA sequence: 

    BC014511.1 BC040679.2 BX248046.1 BX640825.1 

    10 DOTS entries:

    DT.91655154  DT.100715880  DT.454380  DT.92426949  DT.100790904  DT.100714529  DT.97816418  DT.95242640 
    DT.95257083  DT.100715879 

    24/120 AceView cDNA sequences (see all 120):

    CB158366 BX093757 CB044182 BG057625 BM975016 BX647017 CA424721 CK300190 
    BX119534 BX248046 BX397019 AI554311 AW027845 BM128186 BM551913 BQ220195 
    BU849866 BE295607 BG703353 BF966292 NM_198686 BG766350 BF966846 BQ188717 

    highest scoring ESTs for RAB15:

    AA582932 BC040679 AA010873 AA010997 AA380204 AA503244 AA563578 AA568367 AA568687 AA975748 

    Unigene Cluster for RAB15:

    RAB15, member RAS onocogene family
    Hs.512492  [show with all ESTs]
    Unigene Representative Sequence: NM_198686


    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for RAB15

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c
    SP1:                                      -     -                                       
    SP2:              -                       -     -                                       
    SP3:              -                             -                                       
    SP4:                                                                                    

    About this scheme

    ECgene alternative splicing isoforms for RAB15
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000267512(uc010aqk.2 uc001xhz.2) ENST00000426039 ENST00000436278


    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    RAB15 expression in normal and diseased human tissues

    1  / 2  / 3

    6 probe-sets matching RAB15 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    59697_at2, 3 U133-B 1 0.69 1.00 0.98 1.06 AA582932 0.80 1.00 0.91 1
    42831_at2, 3 U95-B 1 0.50 1.00 0.99 0.94 AI201843 0.40 1.00 0.76 1
    59697_at2, 3 U133-A 1 0.69 1.00 -- -- AA582932 0.80 1.00 0.91 1
    221810_at2, 3 U133-A 1 0.64 1.00 -- -- AA631242 0.40 1.00 0.76 1
    59697_at2 U133Plus2 1 0.69 1.00 -- -- -- -- -- -- --
    221810_at2 U133Plus2 1 0.64 1.00 -- -- -- -- -- -- --
    About this table

    RAB15 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    RAB15 gene expression
    RAB15 gene electronic northern expression
    RAB15 gene sage expression
    About these images

    CGAP SAGE TAG: TCTTGAGGCC

    SOURCE GeneReport for Unigene cluster: Hs.512492
    Primers: OriGene genome-wide validated SYBR primer pairs: RAB15
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for RAB15: PPH23235A
        SABiosciences Custom PCR Arrays for RAB15 


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for RAB15 gene from 1 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    mouse
    (Mus musculus)
    Rab155 12 (33.73 cM) RAB15, member RAS oncogene family   -- BY237353 
    About this table        Species with no ortholog for RAB15

    ENSEMBL Gene Tree for RAB15 (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for RAB15 gene
    RAB102  RAB8A2  RAB40AL2  RAB40B2  RAB8B2  RAB40A2  RAB40C2  RAB132  

    RAB15 for paralogs           About GeneDecksing



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 5 variations for RAB15
         5 CNVs: 7038 76660 87249 76661 66653
    QIAGEN SeqTarget long-range PCR primers for resequencing RAB15 

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RAB15 for disorders           About GeneDecksing

    Human Genome Epidemiology (HuGE) Navigator: RAB15 (8 documents)

    Export disorders and mutations for RAB15 gene to outside databases

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    10/19 PubMed articles for RAB15 gene, integrated from 7 sources (see all 19):
    (articles sorted by number of sources associating them with RAB15)
    1. Rab15 effector protein: a novel protein for receptor recycling from the endocytic recycling compartment. (PubMed id 16195351)1, 2 Strick D.J. and Elferink L.A. (2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)1, 2 Heilig R.... Weissenbach J. (2003)
    4. Evolution of the Rab family of small GTP-binding proteins. (PubMed id 11697911)1, 3 Pereira-Leal J.B. and Seabra M.C. (2001)
    5. Genetic susceptibility to distinct bladder cancer sub phenotypes. (PubMed id 19692168)1 Guey L.T....Malats N. (2010)
    6. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    7. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (2010)
    8. Association between genetic variants in VEGF, ERCC3 a nd occupational benzene haematotoxicity. (PubMed id 19773279)1 Hosgood H.D....Lan Q. (2009)
    9. PTEN identified as important risk factor of chronic o bstructive pulmonary disease. (PubMed id 19625176)1 Hosgood H.D....Lan Q. (2009)
    10. Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 376267 HGNC: 20150 AceView: RAB15 Ensembl:ENSG00000139998 euGenes: HUgn376267
    ECgene: RAB15 H-InvDB: RAB15

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
    About This Section
    Patent Information for RAB15 gene:
    Search GeneIP for patents involving RAB15

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
    Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
    About This Section

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     ELISAs and CLIAs for RAB15
           

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