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Aliases & Descriptionsfor RGN gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions regucalcin (senescence marker protein-30)1 2 SMP-302 3 SMP301 2 3 5 regucalcin2 RC1 2 3 senescence marker protein-302 Senescence marker protein 302 3
Export aliases for RGN gene to outside databases Previous GC identifers: GC0XP045740 GC0XP045198 GC0XP045983 GC0XP046695 GC0XP046822 GC0XP046937
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Summariesfor RGN gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for RGN : The protein encoded by this gene is a highly conserved, calcium-binding protein, that is preferentially expressed in the liver and kidney. It may have an important role in calcium homeostasis. Studies in rat indicate that this protein may also play a role in aging, as it shows age-associated down-regulation. This gene is part of a gene cluster on chromosome Xp11.3-Xp11.23. Alternative splicing results in two transcript variants having different 5' UTRs, but encoding the same protein. (provided by RefSeq) UniProtKB/Swiss-Prot: RGN_HUMAN, Q15493 Function : Calcium-binding protein which regulates Ca(2+) signaling by regulating Ca(2+)-dependent enzymatic activity inthe liver and kidney. Decrease of RGN leads to the dysregulation of calcium signaling in the aged liver (By similarity) Gene Wiki entry for RGN
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Genomic Viewsfor RGN gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RGN gene promoter: GR-alpha GR-beta CUTL1 C/EBPalpha NF-1 GATA-2 GATA-3 GATA-1 POU3F2 (N-Oct-5b) POU3F2 (N-Oct-5a) Other transcription factors Search SABiosciences Chromatin IP Primers for RGN Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for RGN
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: Xp11.3 Ensembl cytogenetic band: Xp11.23 HGNC cytogenetic band: Xp11.3 RGN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XP044651: view genomic region
(about GC identifiers )
Start:
44,651,176 bp from pter
End:
44,667,384 bp from pter
Size:
16,209 bases
Orientation:
plus strand
1 alternative location : Chr X+ 46,937,775-46,952,712
RefSeq DNA sequence: NC_000023.10 NT_079573.4
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Proteinsfor RGN gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: RGN_HUMAN, Q15493 (See
protein sequence )Recommended Name: Regucalcin Size : 299 amino acids; 33253 Da
Subcellular location : Cytoplasm (By similarity)
PDB structure from and Proteopedia : 3G4E (3D)
 3G4H (3D)
 
Secondary accessions : A4FTW1 A8K271 Q53FC9 Q5JRR5Alternative splicing : 2 isoforms : Q15493-1 Q15493-2 Explore the universe of human proteins at neXtProt for RGN: NX_Q15493 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_004674.1 NP_690608.1 ENSEMBL proteins: ENSP00000253303 ENSP00000338400 ENSP00000406568 ENSP00000380365 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
RGN for ontologies About GeneDecksing Antibodies for RGN: Assays for RGN:
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Protein
Domains/ Familiesfor RGN gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RGN for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q15493 ProtoNet protein and cluster: Q15493
3 Blocks protein families : IPB005511 Senescence marker protein-30 (SMP-30) IPB008367 Regucalcin signature IPB013658 SMP-30/Gluconolaconase/LRE-like region UniProtKB/Swiss-Prot: RGN_HUMAN, Q15493 Similarity : Belongs to the SMP-30/CGR1 family
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Gene Functionfor RGN gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: RGN_HUMAN, Q15493 Function : Calcium-binding protein which regulates Ca(2+) signaling by regulating Ca(2+)-dependent enzymatic activity inthe liver and kidney. Decrease of RGN leads to the dysregulation of calcium signaling in the aged liver (By similarity)
Genatlas biochemistry entry for RGN :rat calcium binding protein (regucalcin) homolog 2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005509 calcium ion binding
ISS -- GO:0030234 enzyme regulator activity
IEA --
About this table
RGN for ontologies About GeneDecksing Animal Models: 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Rgn) :
RGN for phenotypes About GeneDecksing
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Pathways & Interactionsfor RGN gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Pathway-Focused PCR Array including RGN : PAHS-094A SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RGN 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006874 cellular calcium ion homeostasis
ISS -- GO:0032781 positive regulation of ATPase activity
ISS -- GO:0050848 regulation of calcium-mediated signaling
ISS --
About this table
RGN for ontologies About GeneDecksing
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Drugs & Compoundsfor RGN gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
RGN for compounds About GeneDecksing Browse Tocris compounds for RGN 7 Novoseek chemical compound relationships for RGN gene
About this table
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Transcriptsfor RGN gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for RGN gene (2 alternative transcripts): NM_004683.4 NM_152869.2
Additional cDNA sequence: AB028125.1 AB032064.1 AK223360.1 AK290136.1 BC050371.1 BC058880.1 BC073173.1 D31815.1
6 DOTS entries : DT.100748481 DT.101980961 DT.99998879 DT.91742681 DT.99989586 DT.99999502
24/66 AceView cDNA sequences (see all 66 ):
AA349125 BC050371 BC058880 BM984993 D31815 CD106286 BC073173 NM_152869 CB161948 NM_004683 AI804699 BU949763 BF590441 BE348729 AW772220 CA433989 BU950067 BQ016185 AI767740 CB957212 AI354934 H49432 CA434067 BV204050
highest scoring ESTs for RGN :D31815 AA349125 AI354934 AI628356 AI678127 AI767740 AI804678 AI804699 AV684485 AV685583 Unigene Cluster for RGN:
Regucalcin (senescence marker protein-30) Hs.77854 [show with all ESTs ] Unigene Representative Sequence: NM_152869 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for RGN ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 SP1 :       -   -   -       -           SP2 :                 -           SP3 :       -   -   -       -   -         SP4 :                           SP5 :                          
About this scheme ECgene alternative splicing isoforms for RGN 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000352078 ENST00000469346 ENST00000336169 ENST00000475448 ENST00000457380 ENST00000397180 (uc004dgz.1 uc004dha.1 uc010nho.1 uc010nhp.1 )
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Expression for RGN gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section RGN expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching RGN gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
942_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
D31815
1.00
0.90
0.95
1
210751_s_at2 , 3
U133-A
1
1.00
1.00
--
--
D31815
1.00
0.90
0.95
1
210751_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
RGN for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGCTTTGGA SOURCE GeneReport for Unigene cluster: Hs.77854 Expression variation in blood from EXPOLDB for RGN
SABiosciences Expression via Pathway-Focused PCR Array including RGN : PAHS-094A
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Orthologsfor RGN gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for RGN gene from 5/16 species (see all 16 )
About this table Species with no ortholog for RGN ENSEMBL Gene Tree for RGN (if available)
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Paralogsfor RGN gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor RGN gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr X pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for RGN (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for RGN: --
QIAGEN SeqTarget long-range PCR primers for resequencing RGN
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Disorders & Mutationsfor RGN gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RGN for disorders About GeneDecksing
OMIM: 300212 5 Novoseek disease relationships for RGN gene
About this table Export disorders and mutations for RGN gene to outside databases
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Medical Newsfor RGN gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor RGN gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/51 PubMed articles for RGN gene, integrated from 7 sources (see all 51 ): (articles sorted by number of sources associating them with RGN) Isolation of cDNA clone encoding human homologue of senescence marker protein-30 (SMP30) and its location on the X chromosome. (PubMed id 7548213) 1 , 2 , 3, 7 Fujita T....Maruyama N. (1995) Transcript heterogeneity of the human gene for Ca2+-binding protein regucalcin. (PubMed id 10677570) 1 , 2 , 7 Misawa H. and Yamaguchi M. (2000) The DNA sequence of the human X chromosome. (PubMed id 15772651) 1 , 2 Ross M.T.... Bentley D.R. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Expression and structure of senescence marker protein-30 (SMP30) and its biological significance. (PubMed id 10360682) 1 , 7 Fujita T....Maruyama N. (1999) Senescence marker protein-30 regulates Akt activity and contributes to cell survival in Hep G2 cells. (PubMed id 15358188) 1 , 7 Matsuyama S....Sato N. (2004) Senescence marker protein-30 (SMP30) induces formation of microvilli and bile canaliculi in Hep G2 cells. (PubMed id 15714273) 1 , 7 Ishigami A....Maruyama N. (2005) Hepatic senescence marker protein-30 is involved in t he progression of nonalcoholic fatty liver disease. (PubMed id 19946731) 1 , 7 Park H....Okanoue T. (2010) Regucalcin is under-expressed in human breast and pro state cancers: Effect of sex steroid hormones. (PubMed id 19347872) 1 , 7 Maia C....Socorro S. (2009) Senescence marker protein 30 in acute liver failure: validation of a mass spectrometry proteomics assay. (PubMed id 18507831) 1 , 7 Lv S....Wei L. (2008)
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External Searches for RGN gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RGN gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RGN gene
(According to HUGE )
About This Section --
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Specialized Databases showing RGN gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for RGN gene: Search GeneIP for patents involving RGN GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RGN gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for RGN
ELISAs and CLIAs for RGN
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