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RNF149 Gene

protein-coding   GIFtS: 44

GC02M095656
ring finger protein 149
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
ring finger protein 1491 2 3     OTTHUMP000002029852
FLJ905041 2     E3 ubiquitin-protein ligase RNF1492
DNAPTP22 3     EC 6.3.2.-3
DNA polymerase-transactivated protein 22 3     

External Ids:    HGNC: 231371   Entrez Gene: 2849962   Ensembl: ENSG000001631627   UniProtKB: Q8NC423   

Export aliases for RNF149 gene to outside databases

Previous GC identifers: GC02M101513 GC02M101351 GC02M101258 GC02M101887


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

  --

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RNF149 gene promoter:
         C/EBPbeta   CHOP-10   C/EBPalpha   NRSF form 1   NRSF form 2   LUN-1   NF-E2 p45   NF-E2   STAT3   STAT1   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for RNF149

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for RNF149 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q11.2   Ensembl cytogenetic band:  2q11.2   HGNC cytogenetic band: 2q12.1

RNF149 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RNF149 gene location

GeneLoc gene densities for chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M095656:  view genomic region     (about GC identifiers)

Start:
95,656,251 bp from pter
End:
95,689,364 bp from pter
Size:
33,114 bases
Orientation:
minus strand

1 alternative location:
Chr2- 101,887,681-101,925,163     
RefSeq DNA sequence:
NC_000002.11  NT_022171.15  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
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UniProtKB/Swiss-Prot: RN149_HUMAN, Q8NC42 (See protein sequence)
Recommended Name: E3 ubiquitin-protein ligase RNF149 precursor  
Size: 400 amino acids; 43165 Da
Subcellular location: Membrane; Single-pass membrane protein (Potential)
Secondary accessions: Q53S14 Q8N5I8 Q8NBY5 Q8WUU3

Explore the universe of human proteins at neXtProt for RNF149: NX_Q8NC42 

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_775918.2  

    ENSEMBL proteins: 
    ENSP00000399090 ENSP00000295317 


    Human Recombinant Proteins 
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    Browse Sino Biological Recombinant Proteins
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    2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016020 membrane IEA--
    GO:0016021 integral to membrane IEA--
    About this table

    RNF149 for ontologies           About GeneDecksing



    Antibodies for RNF149: 
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    Browse Enzo Life Sciences for kits & assays
    Browse ELISAs and CLIAs at Uscn 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RNF149 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR001841 Znf_RING
     IPR003137 Protease-assoc_domain
     IPR018957 Znf_C3HC4_RING-type
     IPR013083 Znf_RING/FYVE/PHD

    Graphical View of Domain Structure for InterPro Entry Q8NC42

    ProtoNet protein and cluster: Q8NC42

    1 Blocks protein family: IPB001841 Zn-finger

    UniProtKB/Swiss-Prot: RN149_HUMAN, Q8NC42
    Domain: The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme (By similarity)
    Similarity: Contains 1 PA (protease associated) domain
    Similarity: Contains 1 RING-type zinc finger


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
        
    Browse for Gene Knock-down Tools from Millipore
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    OriGene basic RS shRNA (see all 3): RNF149
    OriGene siRNA: RNF149
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    miRNA:Sigma-Aldrich microRNA Mimics for RNF149
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of RNF149 
    6 SABiosciences Assays for microRNAs that regulate RNF149:
    hsa-miR-498 hsa-miR-577 hsa-miR-607 hsa-miR-300 hsa-miR-155 hsa-miR-381

    Gene
    Editing:
    Browse CompoZr Knockout ZFN at Sigma-Aldrich 

    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    Browse iPSC Reprogramming Factors at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: RNF149
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: RNF149
    OriGene untagged cDNA clones in CMV expression vector: RNF149
    OriGene 3'-UTR clone: RNF149 
    Browse MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for RNF149 
    Browse Sino Biological Human cDNA Clones

    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for RNF149 

    4 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IEA--
    GO:0008270 zinc ion binding IEA--
    GO:0016874 ligase activity IEA--
    GO:0046872 metal ion binding IEA--
    About this table

    RNF149 for ontologies           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section

    UniProtKB/Swiss-Prot: RN149_HUMAN, Q8NC42
    Pathway: Protein modification; protein ubiquitination

        SABiosciences Custom Pathway-Focused PCR Arrays for RNF149 

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNF149

    5/75 Interacting proteins for RNF149 (Q8NC422) via UniProtKB, MINT, and/or STRING (see all 75)

    InteractantInteraction Details
    GeneCardExternal ID(s)
    ATP5C1P365422MINT-6489355
    C3orf26Q9BQ752MINT-6489355
    COPAP536212MINT-6489355
    DDOSTP396562MINT-6489355
    DDX39O001482MINT-6489355
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section
    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RNF149


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA Panels and esiRNA and siRNA for RNF149
    Sigma-Aldrich shRNA Panels and shRNA for RNF149
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 3): RNF149
    OriGene shRNA RFP (see all 3): RNF149
    OriGene basic RS shRNA (see all 3): RNF149
    OriGene siRNA: RNF149
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of RNF149 
    miRNA: Sigma-Aldrich microRNA Mimics for RNF149
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of RNF149 
    6 SABiosciences Assays for microRNAs that regulate RNF149:
    hsa-miR-498 hsa-miR-577 hsa-miR-607 hsa-miR-300 hsa-miR-155 hsa-miR-381
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: RNF149
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: RNF149
    OriGene untagged cDNA clones in CMV expression vector: RNF149
    OriGene 3'-UTR Clone: RNF149 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for RNF149 
    Primers: OriGene genome-wide validated SYBR primer pairs: RNF149
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for RNF149: PPH13503A

    REFSEQ mRNAs for RNF149 gene: 

    NM_173647.3  

    Additional cDNA sequence: 

    AK074985.1 AK075141.1 AK123500.1 AY450390.1 BC019355.1 BC032328.1 BC045743.1 CR591001.1 
    CR621578.1 CR624747.1 

    14 DOTS entries:

    DT.414998  DT.40221131  DT.97763360  DT.439071  DT.91654828  DT.414999  DT.86852548  DT.100811730 
    DT.102828241  DT.120942375  DT.100027144  DT.100720195  DT.95374775  DT.100837766 

    24/292 AceView cDNA sequences (see all 292):

    AK074985 BQ006574 BU622116 CB158321 AJ705152 AA902645 BU633501 BG740535 
    NM_173647 CF529478 CR591001 AI564061 AI286184 BE646330 T40905 AK129799 
    T39949 AI332435 CR624747 BF197913 BM311753 BM979209 CA430329 BU742514 

    highest scoring ESTs for RNF149:

    AA203416 AK074985 AK075141 AL556941 AY450390 BC019355 BC032328 BC045743 BE731780 BE872984 

    Unigene Cluster for RNF149:

    Ring finger protein 149
    Hs.142074  [show with all ESTs]
    Unigene Representative Sequence: NM_173647


    GeneLoc Exon Structure

    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000424632(uc002tax.1) ENST00000463726 ENST00000485752 ENST00000490553
    ENST00000478404 ENST00000295317(uc002taz.1)

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    RNF149 expression in normal and diseased human tissues

    1  / 2  / 3

    4 probe-sets matching RNF149 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    54769_at2, 3 U95-B 1 1.00 1.00 0.89 1.28 AA203416 0.80 1.00 0.91 1
    70957_r_at2, 3 U95-E 2 0.38 0.62 0.97 0.73 AI765984 0.40 0.50 0.45 1
    225414_at2, 3 U133-B 1 1.00 1.00 -- -- AL558987 0.60 1.00 0.82 1
    225414_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table

    RNF149 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    RNF149 gene expression
    RNF149 gene electronic northern expression
    RNF149 gene sage expression
    About these images

    CGAP SAGE TAG: GGCTTTCCCT

    SOURCE GeneReport for Unigene cluster: Hs.142074
    Primers: OriGene genome-wide validated SYBR primer pairs: RNF149
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for RNF149: PPH13503A
        SABiosciences Custom PCR Arrays for RNF149 


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for RNF149 gene from 5 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    chimpanzee
    (Pan troglodytes)
    RNF1491   -- ring finger protein 149 99.33(n)
    99.25(a)
    459455  XM_515662.2  XP_515662.2 
    cow
    (Bos taurus)
    RNF1491   -- ring finger protein 149 84.57(n)
    81.84(a)
    506267  XM_582694.3  XP_582694.3 
    rat
    (Rattus norvegicus)
    Rnf1491   -- ring finger protein 149 82.82(n)
    79.08(a)
    363222  XM_343561.3  XP_343562.3 
    mouse
    (Mus musculus)
    Rnf1491 , 5 1 (18.33 cM)5
    ring finger protein 1491, 5 82.23(n)1
    78.83(a)1
    677021  NM_001033135.21  NP_001028307.11 
     AI8490825  AK0050875  (see all 18)
    chicken
    (Gallus gallus)
    RNF1491   -- ring finger protein 149 74.33(n)
    68.99(a)
    418712  XM_416911.2  XP_416911.2 
    About this table        Species with no ortholog for RNF149

    ENSEMBL Gene Tree for RNF149 (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for RNF149 gene
    RNF1482  RNF1302  RNF1502  RNF1282  RNF1332  

    RNF149 for paralogs           About GeneDecksing



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    10/289 NCBI SNPs in RNF149 are shown (see all 289)
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 2 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ----------
    rs131511,2
    C,F,101898412(+) CTGCTC/GTCATC 4 D E ref1 mis121Minor allele frequency- G:0.15MN NS EA NA WA 1504
    rs9350651,2
    C,F,O,A,H,101899130(+) GAAACC/TTTATT 1 -- int118Minor allele frequency- T:0.10NA NS EA WA 880
    rs11927921,2
    C,F,101896663(+) ataatA/Gatgat 1 -- int13Minor allele frequency- G:0.45MN EA WA 274
    rs11927931,2
    C,F,O,A,101897871(+) GGGGAT/CGACTA 1 -- int115Minor allele frequency- C:0.17NS EA NA WA 696
    rs11927941,2
    C,F,101898222(+) ctcgaG/Acaatc 1 -- int17Minor allele frequency- A:0.22MN NS EA NA 748
    rs11927951,2
    C,F,O,A,H,101900500(+) CTCATC/TCTCTC 1 -- int118Minor allele frequency- T:0.10NA NS EA WA 872
    rs11927961,2
    C,F,A,H,101902260(+) GCATAT/CATACA 1 -- int113Minor allele frequency- C:0.19NS EA NA WA 556
    rs11927971,2
    A101903536(+) cccaaC/Tatttt 1 -- int10--------
    rs11928081,2
    C101892105(+) tcaccA/Gtttta 1 -- ut310--------
    rs11928091,2
    C,F,101894820(+) cccagG/Actggc 1 -- int113Minor allele frequency- A:0.20MN NS EA NA WA 612
    About this table

    HapMap Linkage Disequilibrium images for RNF149 (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for RNF149
         1 CNV: 47994

    QIAGEN SeqTarget long-range PCR primers for resequencing RNF149 

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    10/14 PubMed articles for RNF149 gene, integrated from 7 sources (see all 14):
    (articles sorted by number of sources associating them with RNF149)
    1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Genome-wide association study of pancreatic cancer in Japanese population. (PubMed id 20686608)1 Low S.K....Sakamoto H. (2010)
    5. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
    6. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    7. The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)2 Sjoeblom T.... Velculescu V.E. (2006)
    8. The LIFEdb database in 2006. (PubMed id 16381901)1 Mehrle A....Wiemann S. (2006)
    9. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    10. From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336)1 Wiemann S....Poustka A. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 284996 HGNC: 23137 AceView: RNF149 Ensembl:ENSG00000163162 euGenes: HUgn284996
    ECgene: RNF149 H-InvDB: RNF149

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
    About This Section
    Patent Information for RNF149 gene:
    Search GeneIP for patents involving RNF149

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
    Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
    About This Section

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