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Aliases & Descriptionsfor RNF34 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions ring finger protein 341 2 3 RING finger protein RIFF2 3 FLJ217861 2 hRFI2 3 RIF1 2 CARP-12 3 RIFF1 2 RFI2 5 Human RING finger homologous to inhibitor of apoptosis protein2 3 E3 ubiquitin-protein ligase RNF342 FYVE-RING finger protein Momo2 3 CARP12 Caspases-8 and -10-associated RING finger protein 12 3 EC 6.3.2.-3 Caspase regulator CARP12 3
Export aliases for RNF34 gene to outside databases Previous GC identifers: GC12P120717 GC12M121524 GC12P121621 GC12P120250 GC12P120251 GC12P120300 GC12P121837
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Summariesfor RNF34 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for RNF34 : The protein encoded by this gene contains a RINF finger, a motif known to be involved in protein-protein and protein-DNA interactions. This protein interacts with DNAJA3/hTid-1, which is a DnaJ protein reported to function as a modulator of apoptosis. Overexpression of this gene in Hela cells was shown to confer the resistance to TNF-alpha induced apoptosis, suggesting an anti-apoptotic function of this protein. This protein can be cleaved by caspase-3 during the induction of apoptosis. Alternatively spliced transcript variants encoding distinct isoforms have been reported. (provided by RefSeq) UniProtKB/Swiss-Prot: RNF34_HUMAN, Q969K3 Function : Has E3 ubiquitin-protein ligase activity. Regulates the levels of CASP8 and CASP10 by targeting them forproteasomal degradation. Protects cells against apoptosis induced by TNF. Binds phosphatidylinositol-5-phosphate and phosphatidylinositol-3-phosphate Gene Wiki entry for RNF34
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Genomic Viewsfor RNF34 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RNF34 gene promoter: NF-kappaB1 JunD AP-1 c-Fos c-Jun Fra-1 JunB STAT5B Chx10 Bach1 Other transcription factors Search SABiosciences Chromatin IP Primers for RNF34 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for RNF34
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q24.31 Ensembl cytogenetic band: 12q24.31 HGNC cytogenetic band: 12q24.31 RNF34 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12P118847: view genomic region
(about GC identifiers )
Start:
118,847,691 bp from pter
End:
118,871,945 bp from pter
Size:
24,255 bases
Orientation:
plus strand
1 alternative location : Chr 12+ 121,837,902-121,862,155
RefSeq DNA sequence: NC_000012.11 NT_009775.17
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Proteinsfor RNF34 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: RNF34_HUMAN, Q969K3 (See
protein sequence )Recommended Name: E3 ubiquitin-protein ligase RNF34 Size : 372 amino acids; 41641 Da
Subunit : Interacts with DNAJA3 (Potential). Interacts with CASP8 and CASP10
Subcellular location : Nucleus speckle. Endomembrane system; Peripheral membrane protein
Caution : Was isolated as potential interaction partner of the mitochondrial protein DNAJA3, but the 2 proteins are notin the same cellular compartments
Sequence caution : Sequence=BAH14169.1; Type=Miscellaneous discrepancy; Note=Intron retention;
Secondary accessions : B7Z933 Q8NG47 Q9H6W8Alternative splicing : 2 isoforms : Q969K3-1 Q969K3-2 Explore the universe of human proteins at neXtProt for RNF34: NX_Q969K3 Post-translational modifications:
Auto-ubiquitinated (in vitro) (By similarity)1
Proteolytically cleaved by caspases upon induction of apoptosis by TNF1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_079402.2 NP_919247.1 ENSEMBL proteins: ENSP00000376258 ENSP00000346850 ENSP00000376257 ENSP00000355137 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
RNF34 for ontologies About GeneDecksing Antibodies for RNF34: Assays for RNF34:
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Protein
Domains/ Familiesfor RNF34 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RNF34 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q969K3 ProtoNet protein and cluster: Q969K3
2 Blocks protein families : IPB001841 Zn-finger IPB003034 DNA-binding SAP UniProtKB/Swiss-Prot: RNF34_HUMAN, Q969K3 Similarity : Contains 1 FYVE-type zinc fingerSimilarity : Contains 1 RING-type zinc fingerSimilarity : Contains 2 SAP domains
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Gene Functionfor RNF34 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: RNF34_HUMAN, Q969K3 Function : Has E3 ubiquitin-protein ligase activity. Regulates the levels of CASP8 and CASP10 by targeting them forproteasomal degradation. Protects cells against apoptosis induced by TNF. Binds phosphatidylinositol-5-phosphate and phosphatidylinositol-3-phosphate Enzyme Number (IUBMB): EC 6.3.2.-
5 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
RNF34 for ontologies About GeneDecksing
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Pathways & Interactionsfor RNF34 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section UniProtKB/Swiss-Prot: RNF34_HUMAN, Q969K3 Pathway : Protein modification; protein ubiquitination SABiosciences Custom Pathway-Focused PCR Arrays for RNF34 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNF34
1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006915 apoptosis
IEA --
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RNF34 for ontologies About GeneDecksing
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Drugs & Compoundsfor RNF34 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for RNF34
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Transcriptsfor RNF34 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for RNF34 gene (2 alternative transcripts): NM_025126.2 NM_194271.1
Additional cDNA sequence: AB084914.1 AF306709.1 AK025439.1 AK225285.1 AK304366.1 AY098934.1 BC007826.2 BC029038.1 BC046174.1 BC059954.1 BT007283.1 CR457342.1 CR592405.1 CR601814.1 CR616780.1
23 DOTS entries : DT.100655270 DT.416565 DT.92432368 DT.100655267 DT.101983209 DT.100655265 DT.95241592 DT.40107011
DT.434339 DT.91705125 DT.100655268 DT.121128747 DT.95206635 DT.100749593 DT.100779773 DT.40268240 DT.100699341 DT.121128663 DT.121128704 DT.95203625 DT.95291882 DT.95160233 DT.99938684 24/259 AceView cDNA sequences (see all 259 ):
BX363156 BE742308 CB120192 AW572402 AL555153 AI291755 CK906126 Z38175 BI753327 CA418549 Z44055 BM839804 AI805963 BM709990 BU629743 NM_194271 BM671135 CR616780 AA452121 AL557811 CA776768 CR601814 BM127217 Z41875
highest scoring ESTs for RNF34 :AA135205 AA302367 AA448911 AA449719 AA452121 AA476588 AA504507 AA527070 AA579643 AA625697 Unigene Cluster for RNF34:
Ring finger protein 34 Hs.292804 [show with all ESTs ] Unigene Representative Sequence: NM_194271 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for RNF34 (see all 9 ) ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c SP1 :         -   -   -     -         -             SP2 :         -   -   -   -   -   -   -     -             SP3 :           -   -     -         -             SP4 :             -     -                     SP5 :         -   -       -                    
About this scheme ECgene alternative splicing isoforms for RNF34 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000392465 (uc010szw.1 uc001uak.1 uc001ual.1 uc001uam.1 uc001uan.2 )ENST00000354795 ENST00000392464 ENST00000361234
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Expression for RNF34 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section RNF34 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching RNF34 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
46229_at2 , 3
U95-B
1
1.00
1.00
1.00
1.00
H23103
0.80
1.00
0.91
1
219035_s_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_025126
0.60
1.00
0.82
1
219035_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
RNF34 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCCATTTTTG SOURCE GeneReport for Unigene cluster: Hs.292804 UniProtKB/Swiss-Prot: RNF34_HUMAN, Q969K3 Tissue specificity : Ubiquitous. Detected in heart, brain, liver, skeletal muscle, kidney, pancreas, spleen, thymus,prostate, testis, ovary, colon and leukocytes
SABiosciences Custom PCR Arrays for RNF34
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Orthologsfor RNF34 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for RNF34 gene from 5/9 species (see all 9 )
About this table Species with no ortholog for RNF34 ENSEMBL Gene Tree for RNF34 (if available)
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Paralogsfor RNF34 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for RNF34 gene RFFL 2
RNF34 for paralogs About GeneDecksing
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Genomic Variantsfor RNF34 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 12 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for RNF34 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for RNF34: --
QIAGEN SeqTarget long-range PCR primers for resequencing RNF34
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Disorders & Mutationsfor RNF34 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RNF34 for disorders About GeneDecksing
OMIM: 608299 Export disorders and mutations for RNF34 gene to outside databases
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Medical Newsfor RNF34 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor RNF34 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/15 PubMed articles for RNF34 gene, integrated from 7 sources (see all 15 ): (articles sorted by number of sources associating them with RNF34) Isolation and characterization of a novel gene, hRFI, preferentially expressed in esophageal cancer. (PubMed id 12118383) 1 , 2 , 3 Sasaki S....Croce C.M. (2002) Overexpression of hRFI (human RING finger homologous to inhibitor of apoptosis protein type) inhibits death receptor-mediated apoptosis in colorectal cancer cells. (PubMed id 15897238) 1 , 2 Konishi T.... Nagawa H. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Suppression of caspase-8- and -10-associated RING proteins results in sensitization to death ligands and inhibition of tumor cell growth. (PubMed id 15069192) 1 , 2 McDonald E.R. III and El-Deiry W.S. (2004) Uncoupling of bait-protein expression from the prey p rotein environment adds versatility for cell and tissue interaction proteomics and reveals a complex of CARP-1 and the PKA Cbeta1 subunit. (PubMed id 20564261) 1 Erlbruch A....Bossemeyer D. (2010) Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. (PubMed id 19549727) 1 Markson G....Sanderson C.M. (2009) Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332) 2 Mayya V.... Han D.K. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) CARPs enhance p53 turnover by degrading 14-3-3sigma and stabilizing MDM2. (PubMed id 18382127) 1 Yang W....El-Deiry W.S. (2008)
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External Searches for RNF34 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RNF34 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RNF34 gene
(According to HUGE )
About This Section --
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Specialized Databases showing RNF34 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for RNF34 gene: Search GeneIP for patents involving RNF34 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RNF34 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for RNF34
ELISAs and CLIAs for RNF34
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Products for RNF34
Proteins for RNF34
Publications for RNF34
Search Box for RNF34
Summaries for RNF34
Transcripts for RNF34
Variants for RNF34
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