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Aliases & Descriptionsfor SLC17A3 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions solute carrier family 17 (sodium phosphate), member 31 2 Na(+)/PI cotransporter 42 3 NPT41 2 3 5 OTTHUMP000000161262 Solute carrier family 17 member 32 3 sodium-dependent phosphate transport protein 42 Sodium/phosphate cotransporter 42 3
Export aliases for SLC17A3 gene to outside databases Previous GC identifers: GC06M025902 GC06M025953 GC06M025833
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Summariesfor SLC17A3 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: NPT4_HUMAN, O00476 Function : May be involved in actively transporting phosphate into cells via Na(+) cotransport (By similarity)
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Genomic Viewsfor SLC17A3 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SLC17A3 gene promoter: XBP-1 ZID E47 MyoD Pax-5 NRSF form 2 NRSF form 1 HNF-1A Nkx3-1 v4 Nkx3-1 v3 Other transcription factors Search SABiosciences Chromatin IP Primers for SLC17A3 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p22.2 HGNC cytogenetic band: 6p21.3 SLC17A3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M025788: view genomic region
(about GC identifiers )
Start:
25,788,565 bp from pter
End:
25,817,700 bp from pter
Size:
29,136 bases
Orientation:
minus strand
1 alternative location : Chr 6- 25,833,294-25,882,514
RefSeq DNA sequence: NC_000006.11 NT_007592.15
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Proteinsfor SLC17A3 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: NPT4_HUMAN, O00476 (See
protein sequence )Recommended Name: Sodium-dependent phosphate transport protein 4 Size : 420 amino acids; 46106 Da
Subcellular location : Endoplasmic reticulum membrane; Multi-pass membrane protein
Sequence caution : Sequence=AAB53423.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions : B7WNJ5 Q8WWC7 Q9H533Explore the universe of human proteins at neXtProt for SLC17A3: NX_O00476
REFSEQ proteins (2 alternative transcripts):
NP_001091956.1 NP_006623.2 ENSEMBL proteins: ENSP00000421855 ENSP00000424027 ENSP00000380250 ENSP00000353873 ENSP00000355307 ENSP00000424729 ENSP00000415622 Human Recombinant Proteins 5/9 Gene Ontology (GO) cellular component terms (GO ID links to tree view) (see all 9 ):
About this table
SLC17A3 for ontologies About GeneDecksing Antibodies for SLC17A3: Assays for SLC17A3:
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Protein
Domains/ Familiesfor SLC17A3 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SLC17A3 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O00476 ProtoNet protein and cluster: O00476
UniProtKB/Swiss-Prot: NPT4_HUMAN, O00476 Similarity : Belongs to the major facilitator superfamily. Sodium/anion cotransporter family
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Gene Functionfor SLC17A3 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: NPT4_HUMAN, O00476 Function : May be involved in actively transporting phosphate into cells via Na(+) cotransport (By similarity)
Genatlas biochemistry entry for SLC17A3 :solute carrier family 17 (sodium/phosphate cotransport) member 3,expressed in liver and kidney 5/8 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 8 ):
GO ID Qualified GO term Evidence PubMed IDs GO:0005436 sodium:phosphate symporter activity
ISS -- GO:0008308 voltage-gated anion channel activity
IDA -- GO:0008514 organic anion transmembrane transporter activity
IDA -- GO:0015143 urate transmembrane transporter activity
IDA -- GO:0015238 drug transmembrane transporter activity
IDA --
About this table
SLC17A3 for ontologies About GeneDecksing
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Pathways & Interactionsfor SLC17A3 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Pathway-Focused PCR Array including SLC17A3 : PAHS-093A Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC17A3 5/10 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 10 ):
About this table
SLC17A3 for ontologies About GeneDecksing
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Drugs & Compoundsfor SLC17A3 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for SLC17A3
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Transcriptsfor SLC17A3 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for SLC17A3 gene (2 alternative transcripts): NM_001098486.1 NM_006632.3
Additional cDNA sequence: AK296070.1 AK296082.1 AK298271.1 AK298297.1 AK298367.1 BC017952.1 U90545.1 Z83953.1
5 DOTS entries : DT.403125 DT.100742561 DT.121332300 DT.40120631 DT.95204537
19 AceView cDNA sequences :
AI222455 AI733707 CB163247 BC017952 BG427288 BX107915 U90545 NM_006632 AI244777 AA858296 AI821963 BF431676 Z83953 AI792430 AI311320 AA706766 AI247271 AA814153 BG399960
highest scoring ESTs for SLC17A3 :U90545 AA706766 AA814153 AI222455 AI244777 AI247271 AI733707 AI792430 BC017952 BG399960 Unigene Cluster for SLC17A3:
Solute carrier family 17 (sodium phosphate), member 3 Hs.327179 [show with all ESTs ] Unigene Representative Sequence: AK298271 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for SLC17A3 (see all 6 ) ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 SP1 :       -       -             -                 SP2 :   -   -   -       -             -                 SP3 :       -       -   -                           SP4 :       -                                   SP5 :             -   -                          
About this scheme ECgene alternative splicing isoforms for SLC17A3 10 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000481949 ENST00000505420 ENST00000397060 (uc003nfk.3 uc003nfi.3 )ENST00000360657 ENST00000361703 ENST00000509714 (uc011djz.1 ) ENST00000506105 ENST00000503922 (uc011dka.1 ) ENST00000308453 ENST00000449356
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Expression for SLC17A3 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section SLC17A3 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching SLC17A3 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
34436_at2 , 3
U95-A
1
0.56
1.00
1.00
1.00
U90545
1.00
0.80
0.91
1
207298_at2 , 3
U133-A
1
0.64
1.00
--
--
NM_006632
0.60
0.83
0.73
1
207298_at2
U133Plus2
1
0.64
1.00
--
--
--
--
--
--
--
About this table
SLC17A3 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGGGAGGCT SOURCE GeneReport for Unigene cluster: Hs.327179 Expression variation in blood from EXPOLDB for SLC17A3
UniProtKB/Swiss-Prot: NPT4_HUMAN, O00476 Tissue specificity : Expressed mainly in the liver and kidney, very low levels in the small intestine and testis
SABiosciences Expression via Pathway-Focused PCR Array including SLC17A3 : PAHS-093A
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Orthologsfor SLC17A3 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for SLC17A3 gene from 5 species
About this table Species with no ortholog for SLC17A3 ENSEMBL Gene Tree for SLC17A3 (if available)
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Paralogsfor SLC17A3 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for SLC17A3 gene SLC17A4 2 SLC17A1 2 SLC17A5 2 SLC17A2 2
SLC17A3 for paralogs About GeneDecksing
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Genomic Variantsfor SLC17A3 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 6 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for SLC17A3 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for SLC17A3: --
QIAGEN SeqTarget long-range PCR primers for resequencing SLC17A3
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Disorders & Mutationsfor SLC17A3 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SLC17A3 for disorders About GeneDecksing
OMIM: 611034 disorders : 232240 Human Gene Mutation Database (HGMD) : SLC17A3 Human Genome Epidemiology (HuGE) Navigator: SLC17A3 (7 documents) Export disorders and mutations for SLC17A3 gene to outside databases
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Medical Newsfor SLC17A3 gene (Possibly Related Articles in
Doctor's Guide )
About This Section
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Publicationsfor SLC17A3 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/16 PubMed articles for SLC17A3 gene, integrated from 7 sources (see all 16 ): (articles sorted by number of sources associating them with SLC17A3) A 1.1-Mb transcript map of the hereditary hemochromatosis locus. (PubMed id 9149941) 1 , 2 , 3 Ruddy D.A.... Feder J.N. (1997) NPT4, a new microsomal phosphate transporter: mutation analysis in glycogen storage disease type Ic. (PubMed id 15505377) 1 , 2 , 7 Melis D.... Verheijen F. (2004) Examination of genetic polymorphisms in newborns for signatures of sex-specific prenatal selection. (PubMed id 20587610) 1 Ucisik-Akkaya E....Tevfik Dorak M. (2010) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Common variants in SLC17A3 gene affect intra-personal variation in serum uric acid levels in longitudinal time series. (PubMed id 20162743) 1 Polasek O....KolciA8 I. (2010) Human sodium phosphate transporter 4 (hNPT4/SLC17A3) as a common renal secretory pathway for drugs and urate. (PubMed id 20810651) 1 Jutabha P....Sakurai H. (2010 Nov 5) Common variants on chromosome 6p22.1 are associated w ith schizophrenia. (PubMed id 19571809) 1 Shi J....Gejman P.V. (2009) Common polymorphisms influencing serum uric acid leve ls contribute to susceptibility to gout, but not to coronary artery disease. (PubMed id 19890391) 1 Stark K....Hengstenberg C. (2009) Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. (PubMed id 19862010) 1 Ganesh S.K....Lin J.P. (2009) Sex and age interaction with genetic association of a therogenic uric acid concentrations. (PubMed id 20053405) 1 BrandstAotter A....Kronenberg F. (2009)
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External Searches for SLC17A3 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SLC17A3 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SLC17A3 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SLC17A3 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for SLC17A3 gene: Search GeneIP for patents involving SLC17A3 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SLC17A3 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for SLC17A3
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