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SLC5A4 Gene

protein-coding   GIFtS: 47

GC22M015572
solute carrier family 5 (low affinity glucose cotransporter), member 4
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
solute carrier family 5 (low affinity glucose cotransporter), member 41 2     Na(+)/glucose cotransporter 32 3
SAAT11 2 3     sodium transporter2
SGLT31 2     solute carrier family 5 (neutral amino acid transporters, system A), member 42
DJ90G24.41 2     low affinity sodium-glucose cotransporter2
Sodium/glucose cotransporter 32 3     low affinity sodium glucose cotransporter2
Solute carrier family 5 member 42 3     SGLT23

External Ids:    HGNC: 110391   Entrez Gene: 65272   Ensembl: ENSG000001001917   UniProtKB: Q9NY913   

Export aliases for SLC5A4 gene to outside databases

Previous GC identifers: GC22M029310 GC22M030939 GC22M032614


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: SC5A4_HUMAN, Q9NY91
Function: Sodium-dependent glucose transporter (By similarity)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLC5A4 gene promoter:
         HNF-1A   CUTL1   LUN-1   c-Myc   Max1   MRF-2   CREB   deltaCREB   USF1   Max   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for SLC5A4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q12.2-q12.3   Ensembl cytogenetic band:  22q12.3   HGNC cytogenetic band: 22q12.1-q12.3

SLC5A4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC5A4 gene location

GeneLoc gene densities for chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22M015572:  view genomic region     (about GC identifiers)

Start:
15,572,136 bp from pter
End:
15,608,952 bp from pter
Size:
36,817 bases
Orientation:
minus strand

1 alternative location:
Chr22- 32,614,465-32,651,328     
RefSeq DNA sequence:
NC_000022.10  NT_011520.12  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: SC5A4_HUMAN, Q9NY91 (See protein sequence)
Recommended Name: Low affinity sodium-glucose cotransporter  
Size: 659 amino acids; 72456 Da
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: O15279

Explore the universe of human proteins at neXtProt for SLC5A4: NX_Q9NY91 

REFSEQ proteins: NP_055042.1  

ENSEMBL proteins: 
ENSP00000266086 


Human Recombinant Proteins 
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Browse ProSpec Recombinant Proteins

2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0016020 membrane IEA--
GO:0016021 integral to membrane IEA--
About this table

SLC5A4 for ontologies           About GeneDecksing



Antibodies for SLC5A4: 
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Browse antibodies at Epitomics

Assays for SLC5A4: 
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Browse Enzo Life Sciences for kits & assays
Browse ELISAs and CLIAs at Uscn 


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SLC5A4 for domains           About GeneDecksing

3 InterPro domains/families:
 IPR019900 Na/solute_symporter_subgr
 IPR018212 Na/solute_symporter_CS
 IPR001734 Na/solute_symporter

Graphical View of Domain Structure for InterPro Entry Q9NY91

ProtoNet protein and cluster: Q9NY91

1 Blocks protein family: IPB001734 Na+/solute symporter

UniProtKB/Swiss-Prot: SC5A4_HUMAN, Q9NY91
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family


(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: SC5A4_HUMAN, Q9NY91
Function: Sodium-dependent glucose transporter (By similarity)

Inhib.
RNA:
    
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich siRNA Panels and esiRNA and siRNA for SLC5A4
Sigma-Aldrich shRNA for SLC5A4
OriGene 29mer shRNA kits in GFP-retroviral vector: SLC5A4
OriGene shRNA RFP: SLC5A4
OriGene basic RS shRNA: SLC5A4
OriGene siRNA: SLC5A4
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of SLC5A4 
miRNA:Browse microRNA Mimics at Sigma-Aldrich
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of SLC5A4 
Search SABiosciences for Assays for microRNAs that regulate SLC5A4

Gene
Editing:
Browse CompoZr Knockout ZFN at Sigma-Aldrich 

Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
Browse iPSC Reprogramming Factors at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: SLC5A4
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: SLC5A4
OriGene untagged cDNA clones in CMV expression vector: SLC5A4
Browse 3'-UTR reporter clones for miRNA target validation 
Browse MicroRNA Expression Plasmids 
GenScript Custom cDNA clone Services for SLC5A4 
Browse Sino Biological Human cDNA Clones

Cell
Lines:
  
GenScript Custom overexpressing Cell Line Services for SLC5A4 

Genatlas biochemistry entry for SLC5A4:
solute carrier family 5,neutral amino acid transporters,system A,member 4,expressed in kidney,small
intestine,spleen,liver,muscle

2 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005215 transporter activity IEA--
GO:0015293 symporter activity IEA--
About this table

SLC5A4 for ontologies           About GeneDecksing


(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section


SLC5A4 for pathways           About GeneDecksing

1 Millipore Pathway for SLC5A4
    Sodium channels and transporters- inward current

    SABiosciences Pathway-Focused PCR Array including SLC5A4: PAHS-070A 

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC5A4

5 Gene Ontology (GO) biological process terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006810 transport ----
GO:0006811 ion transport IEA--
GO:0006814 sodium ion transport IEA--
GO:0008643 carbohydrate transport IEA--
GO:0055085 transmembrane transport IEA--
About this table

SLC5A4 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

SLC5A4 for compounds           About GeneDecksing

Browse Small Molecules at Sigma-Aldrich
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for SLC5A4
3 Novoseek chemical compound relationships for SLC5A4 gene
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
methyl alpha-d-glucopyranoside 68.8 1 7493971 (1)
glucose 52.1 38 7493971 (3), 7730974 (2), 11509120 (2), 11025446 (2) (see all 12)
galactose 36 4 11602601 (1)
About this table



(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib.
RNA:
     
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich siRNA Panels and esiRNA and siRNA for SLC5A4
Sigma-Aldrich shRNA for SLC5A4
OriGene 29mer shRNA kits in GFP-retroviral vector: SLC5A4
OriGene shRNA RFP: SLC5A4
OriGene basic RS shRNA: SLC5A4
OriGene siRNA: SLC5A4
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of SLC5A4 
miRNA: Browse microRNA Mimics at Sigma-Aldrich
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of SLC5A4 
Search SABiosciences for Assays for microRNAs that regulate SLC5A4
Clones: Browse FLAG tag genes at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: SLC5A4
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: SLC5A4
OriGene untagged cDNA clones in CMV expression vector: SLC5A4
Browse 3'-UTR reporter clones for miRNA target validation 
Browse OriGene MicroRNA Expression Plasmids 
GenScript Custom cDNA clone Services for SLC5A4 
Primers: OriGene genome-wide validated SYBR primer pairs: SLC5A4
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for SLC5A4: PPH12009A

REFSEQ mRNAs for SLC5A4 gene: 

NM_014227.2  

Additional cDNA sequence: 

AJ133127.1 GQ292716.1 U41897.1 

2 DOTS entries:

DT.40271884  DT.421760 

5 AceView cDNA sequences:

H55471 NM_014227 AJ133127 BU157483 U41897 

highest scoring ESTs for SLC5A4:

AJ133127 H55471 NM_014227 U41897 BU157483 AL008723 BF895438 BX280314 DA876270 H55533 

Unigene Cluster for SLC5A4:

Solute carrier family 5 (low affinity glucose cotransporter), member 4
Hs.130101  [show with all ESTs]
Unigene Representative Sequence: AJ133127


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000266086(uc003ami.2)

(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

SLC5A4 expression in normal and diseased human tissues

1  / 2  / 3

3 probe-sets matching SLC5A4 gene

Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
33010_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 AL008723 0.20 1.00 0.72 1
215960_at2, 3 U133-A 1 0.91 1.00 -- -- AJ133127 0.80 1.00 0.91 1
215960_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
About this table

SLC5A4 for expression           About GeneDecksing

Data from Genenote  (Publications) and GNF BioGPS
    About these images
SLC5A4 gene expression
SLC5A4 gene electronic northern expression
SLC5A4 gene sage expression
About these images

CGAP SAGE TAG: AGCTCCCTGA

SOURCE GeneReport for Unigene cluster: Hs.130101
Primers: OriGene genome-wide validated SYBR primer pairs: SLC5A4
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for SLC5A4: PPH12009A
    SABiosciences Expression via Pathway-Focused PCR Array including SLC5A4: PAHS-070A 


(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for SLC5A4 gene from 4 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
SLC5A41   -- solute carrier family 5 (low affinity glucose cotransporter), more 98.99(n)
98.79(a)
470189  XM_525573.2  XP_525573.2 
cow
(Bos taurus)
SLC5A41   -- solute carrier family 5 (low affinity glucose cotransporter), more 84.77(n)
81.03(a)
527441  XM_605832.3  XP_605832.3 
rat
(Rattus norvegicus)
Slc5a4a1   -- solute carrier family 5, member 4a 81.03(n)
80.27(a)
294341  XM_228085.4  XP_228085.4 
mouse
(Mus musculus)
Slc5a4a1 , 5 10 (38.71 cM)5
solute carrier family 5, member 4a1, 5 80.87(n)1
79.24(a)1
644521  NM_133184.21  NP_573447.21 
 AC0058185  AC0065075  (see all 8)
About this table        Species with no ortholog for SLC5A4

ENSEMBL Gene Tree for SLC5A4 (if available)

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
Paralogs for SLC5A4 gene
SLC5A32  SLC5A102  SLC5A22  SLC5A12  SLC5A92  SLC5A112  

SLC5A4 for paralogs           About GeneDecksing



(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

10/394 NCBI SNPs in SLC5A4 are shown (see all 394)
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidChr 22 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
----------
rs7340231,2
C,A,H,32619908(+) GGCAAA/GGAACT 1 -- int17Minor allele frequency- G:0.17NS NA WA 202
rs7382061,2
C,32626458(+) TAGCAC/GCAAAG 1 -- int15Minor allele frequency- G:0.00NS EA NA 474
rs10403811,2
C32616594(+) GAAGGT/CGGGGC 1 -- int110Minor allele frequency- C:0.00NA EA MN NS 1034
rs20119001,2
C,A,32636438(+) tatatA/Gtgtgt 1 -- int13Minor allele frequency- G:0.43NA 146
rs20682091,2
C,F,A,32626908(+) GGCCCG/ATCTTA 1 -- int115Minor allele frequency- A:0.34NS EA NA WA 912
rs21425581,2
C,A,32615547(+) aaagaA/Gaaaga 1 -- int1 trp34Minor allele frequency- G:0.49NA WA 78
rs21425591,2
C,F,A,32624674(+) GTCCCC/TTGGGT 1 -- int110Minor allele frequency- T:0.16NS EA NA WA 548
rs21790651,2
C,F,O,A,32624603(+) GTATCG/AATTTT 1 -- int120Minor allele frequency- A:0.16EA NS NA WA 1294
rs21790661,2
C,F,O,A,H,32624868(+) GGTGGA/GAATTT 1 -- int115Minor allele frequency- G:0.37NA NS EA WA 856
rs22351681,2
C,F,32649431(+) AAGGGC/ATGAGG 1 -- int117Minor allele frequency- A:0.11EA NS NA WA 2298
About this table

HapMap Linkage Disequilibrium images for SLC5A4 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for SLC5A4
     1 CNV: 5358

QIAGEN SeqTarget long-range PCR primers for resequencing SLC5A4 

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section

SLC5A4 for disorders           About GeneDecksing

Genetic Association Database (GAD): SLC5A4
Human Genome Epidemiology (HuGE) Navigator: SLC5A4 (2 documents)

Export disorders and mutations for SLC5A4 gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
About This Section

10/25 PubMed articles for SLC5A4 gene, integrated from 7 sources (see all 25):
(articles sorted by number of sources associating them with SLC5A4)
  1. Neuroticism mediates the association of the serotonin transporter gene with lifetime major depression. (PubMed id 16319503)1, 4 Munafo M.R....Johnstone E.C. (2006)
  2. The sodium/substrate symporter family: structural and functional features. (PubMed id 12354616)1, 3 Jung H. (2002)
  3. The DNA sequence of human chromosome 22. (PubMed id 10591208)1, 2 Dunham I....O'Brien K.P. (1999)
  4. Transport of the new chemotherapeutic agent beta-D-glucosylisophosphoramide mustard (D-19575) into tumor cells is mediated by the Na+-D-glucose cotransporter SAAT1. (PubMed id 9501190)1, 3 Veyhl M....Koepsell H. (1998)
  5. Protection of muscle membrane excitability during cycling in humans: a role for SGLT3? (PubMed id 18198291)1 Fairchild T.J. (2008)
  6. Lack of association between the Serotonin Transporter Promoter Polymorphism (5-HTTLPR) and Panic Disorder: a systematic review and meta-analysis. (PubMed id 17705872)1 Blaya C....Manfro G.G. (2007)
  7. Imino sugars are potent agonists of the human glucose sensor SGLT3. (PubMed id 17110502)1 Voss A.A....Wright E.M. (2007)
  8. A glucose sensor hiding in a family of transporters. (PubMed id 13130073)1 Diez-Sampedro A....Koepsell H. (2003)
  9. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)
  10. Molecular characteristics of Na(+)-coupled glucose transporters in adult and embryonic rat kidney. (PubMed id 7493971)7 You G....Hediger M.A. (1995)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 6527 HGNC: 11039 AceView: SLC5A4 Ensembl:ENSG00000100191 euGenes: HUgn6527
ECgene: SLC5A4 H-InvDB: SLC5A4

(According to HUGE)
About This Section
  --

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
About This Section
Patent Information for SLC5A4 gene:
Search GeneIP for patents involving SLC5A4

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
About This Section

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GeneCards Homepage - Last full update: 31 Dec 2010 - Incremental updates: 9 Jan 2011 , 10 Jan 2011

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The GeneCards human gene database gene index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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