ST6GAL2 Gene
protein-coding GIFtS : 45
GC02M101093
ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 (Previous name: sialyltransferase 2 (monosialoganglioside sialyltransferase) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: SIAT2 )
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Aliases & Descriptionsfor ST6GAL2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions ST6 beta-galactosamide alpha-2,6-sialyltranferase 21 2 St6GalII1 KIAA18771 2 3 5 FLJ377302 sialyltransferase 2 (monosialoganglioside sialyltransferase)1 2 beta-galactoside alpha-2,6-sialyltransferase II2 Alpha 2,6-ST 22 3 FLJ383342 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase 22 3 beta-galactoside alpha-2,6-sialyltransferase 22 SIAT22 3 FLJ307112 hST6Gal II2 3 EC 2.4.99.13 ST6Gal II2 3 Sialyltransferase 23 ST6GalII2 3 ST6GALII5 St6gal21
Export aliases for ST6GAL2 gene to outside databases Previous GC identifers: GC02M106877 GC02M106789 GC02M107418
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Summariesfor ST6GAL2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for ST6GAL2 : Sialyltransferases, such as ST6GAL2 (EC 2.4.99.1), are type II transmembrane proteins that catalyze the transfer of sialic acid from CMP-sialic acid to an acceptor carbohydrate, usually to the terminal ends of carbohydrate chains.(supplied by OMIM) UniProtKB/Swiss-Prot: SIAT2_HUMAN, Q96JF0 Function : Transfers sialic acid from the donor of substrate CMP-sialic acid to galactose containing acceptorsubstrates. Has alpha-2,6-sialyltransferase activity toward oligosaccharides that have the Gal-beta-1,4-GlcNAc sequence at the non-reducing end of their carbohydrate groups, but it has weak or no activities toward glycoproteins and glycolipids
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Genomic Viewsfor ST6GAL2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ST6GAL2 gene promoter: Nkx6-1 Nkx3-1 v4 Nkx3-1 Nkx3-1 v1 Nkx3-1 v2 Nkx3-1 v3 POU3F1 STAT1alpha STAT1beta STAT2 Other transcription factors Search SABiosciences Chromatin IP Primers for ST6GAL2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ST6GAL2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q11.2-q12.1 Ensembl cytogenetic band: 2q12.3 HGNC cytogenetic band: 2q11-q12 ST6GAL2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M101093: view genomic region
(about GC identifiers )
Start:
101,093,170 bp from pter
End:
101,178,717 bp from pter
Size:
85,548 bases
Orientation:
minus strand
1 alternative location : Chr 2- 107,418,056-107,503,564
RefSeq DNA sequence: NC_000002.11 NT_022171.15
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Proteinsfor ST6GAL2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: SIAT2_HUMAN, Q96JF0 (See
protein sequence )Recommended Name: Beta-galactoside alpha-2,6-sialyltransferase 2 Size : 529 amino acids; 60158 Da
Subcellular location : Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein (By similarity)
Sequence caution : Sequence=AAH08680.1; Type=Erroneous initiation; Sequence=BAB47506.1; Type=Erroneous initiation;
Secondary accessions : Q53QP4 Q86Y44 Q8IUG7 Q96HE4Alternative splicing : 2 isoforms : Q96JF0-1 Q96JF0-2 Explore the universe of human proteins at neXtProt for ST6GAL2: NX_Q96JF0
REFSEQ proteins (3 alternative transcripts):
NP_001135823.1 NP_001135824.1 NP_115917.1 ENSEMBL proteins: ENSP00000395581 ENSP00000387332 ENSP00000355386 ENSP00000386942 ENSP00000355273 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
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ST6GAL2 for ontologies About GeneDecksing Antibodies for ST6GAL2: Assays for ST6GAL2:
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Protein
Domains/ Familiesfor ST6GAL2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ST6GAL2 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q96JF0 ProtoNet protein and cluster: Q96JF0
1 Blocks protein family : IPB001675 Glycosyl transferase UniProtKB/Swiss-Prot: SIAT2_HUMAN, Q96JF0 Similarity : Belongs to the glycosyltransferase 29 family
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Gene Functionfor ST6GAL2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: SIAT2_HUMAN, Q96JF0 Function : Transfers sialic acid from the donor of substrate CMP-sialic acid to galactose containing acceptorsubstrates. Has alpha-2,6-sialyltransferase activity toward oligosaccharides that have the Gal-beta-1,4-GlcNAc sequence at the non-reducing end of their carbohydrate groups, but it has weak or no activities toward glycoproteins and glycolipids Catalytic activity : CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine = CMP +alpha-N-acetylneuraminyl-2,6-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine Biophysicochemical properties : Kinetic parameters: KM=0.74 mM for Gal-beta-1,4-GlcNAc-beta-O-octyl; KM=0.71 mM forGal-beta-1,4-GlcNAc; KM=0.48 mM for lacto-N-neotetraose; Induction : By IL6/interleukin-6 and IL8//interleukin-8Enzyme Number (IUBMB): EC 2.4.99.1
3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003824 catalytic activity
-- -- GO:0003835 beta-galactoside alpha-2,6-sialyltransferase activity
IDA 12235148 GO:0008373 sialyltransferase activity
-- --
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ST6GAL2 for ontologies About GeneDecksing
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Pathways & Interactionsfor ST6GAL2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
ST6GAL2 for pathways About GeneDecksing 1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for ST6GAL2 SABiosciences Custom Pathway-Focused PCR Arrays for ST6GAL2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for ST6GAL2 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ST6GAL2 5 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
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ST6GAL2 for ontologies About GeneDecksing
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Drugs & Compoundsfor ST6GAL2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for ST6GAL2
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Transcriptsfor ST6GAL2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for ST6GAL2 gene (3 alternative transcripts): NM_001142351.1 NM_001142352.1 NM_032528.2
Additional cDNA sequence: AB058780.1 AB059555.1 AJ512141.1 AK055273.1 AK095049.1 AK095653.1 AK307784.1 BC008680.1 FJ433883.1 FJ433884.1 FJ433885.1
3 DOTS entries : DT.40257355 DT.91665662 DT.120991405
13 AceView cDNA sequences :
BX327611 AX795201 BE613250 AX795200 AA385852 BE612797 BC008680 AB059555 NM_032528 AX795199 BF038052 BX353569 AJ512141
highest scoring ESTs for ST6GAL2 :AB059555 BC008680 BE612797 AA514734 AB058780 AJ512141 AK055273 AK095049 AK095653 AW004016 Unigene Cluster for ST6GAL2:
ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 Hs.98265 [show with all ESTs ] Unigene Representative Sequence: NM_032528 GeneLoc Exon Structure 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000419159 ENST00000409087 (uc002tds.3 ) ENST00000361803 ENST00000409382 (uc002tdq.2 )ENST00000361686 (uc002tdr.2 )
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Expression for ST6GAL2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section ST6GAL2 expression in normal and diseased human tissues 1 / 2 / 3
4 probe-sets matching ST6GAL2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
47621_at2 , 3
U95-B
1
1.00
1.00
1.00
1.00
AW004016
0.60
1.00
0.82
1
228821_at2 , 3
U133-B
1
1.00
1.00
--
--
AW004016
0.60
1.00
0.82
1
228821_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
1555123_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
About this table
ST6GAL2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTTTCATTTG SOURCE GeneReport for Unigene cluster: Hs.98265 UniProtKB/Swiss-Prot: SIAT2_HUMAN, Q96JF0 Tissue specificity : Weakly expressed in some tissues, such as small intestine, colon and fetal brain
SABiosciences Custom PCR Arrays for ST6GAL2
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Orthologsfor ST6GAL2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for ST6GAL2 gene from 5/7 species (see all 7 )
About this table Species with no ortholog for ST6GAL2 ENSEMBL Gene Tree for ST6GAL2 (if available)
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Paralogsfor ST6GAL2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for ST6GAL2 gene ST6GALNAC3 2 ST6GALNAC5 2 ST6GAL1 2 ST6GALNAC4 2 ST6GALNAC6 2
ST6GAL2 for paralogs About GeneDecksing
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Genomic Variantsfor ST6GAL2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 2 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for ST6GAL2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ST6GAL2: --
QIAGEN SeqTarget long-range PCR primers for resequencing ST6GAL2
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Disorders & Mutationsfor ST6GAL2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ST6GAL2 for disorders About GeneDecksing
OMIM: 608472 Human Genome Epidemiology (HuGE) Navigator: ST6GAL2 (4 documents) Export disorders and mutations for ST6GAL2 gene to outside databases
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Medical Newsfor ST6GAL2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor ST6GAL2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/17 PubMed articles for ST6GAL2 gene, integrated from 7 sources (see all 17 ): (articles sorted by number of sources associating them with ST6GAL2) Identification and functional expression of a second human beta- galactoside alpha2,6-sialyltransferase, ST6Gal II. (PubMed id 12603328) 1 , 2 Krzewinski-Recchi M.A....Delannoy P. (2003) Characterization of the second type of human beta-galactoside alpha2,6-sialyltransferase (ST6Gal II) that sialylates Galbeta1,4GlcNAc structures on oligosaccharides preferentially. (PubMed id 12235148) 1 , 2 Takashima S.... Tsujimoto M. (2002) Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11347906) 1 , 2 Nagase T.... Ohara O. (2001) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Identification of novel candidate genes for treatment response to risperidone and susceptibility for schizophrenia: integrated analy sis among pharmacogenomics, mouse expression, and genetic case-control associat ion approaches. (PubMed id 19850283) 1 Ikeda M....Iwata N. (2010) Transcriptional regulation of the human ST6GAL2 gene in cerebral cortex and neuronal cells. (PubMed id 19768537) 1 Lehoux S....Krzewinski-Recchi M.A. (2010) Investigation of genetic susceptibility factors for h uman longevity - A targeted nonsynonymous SNP study. (PubMed id 20800603) 1 Flachsbart F....Nebel A. (2010 Dec 10) Coeliac disease associated risk variants in TNFAIP3 and REL implicate altered NF-{kappa}B signalling. (PubMed id 19240061) 1 Trynka G....Wijmenga C. (2009) IL-6 and IL-8 increase the expression of glycosyltransferases and sulfotransferases involved in the biosynthesis of sialylated and/or sulfated Lewis x epitopes in the human bronchial mucosa. (PubMed id 17944600) 2 Groux-Degroote S.... Delannoy P. (2008) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006)
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External Searches for ST6GAL2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ST6GAL2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ST6GAL2 gene
(According to HUGE )
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Specialized Databases showing ST6GAL2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
GGDB http://riodb.ibase.aist.go.jp/rcmg/ggdb/Homolog?cat=symbol&symbol=ST6GAL2
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About This Section Patent Information for ST6GAL2 gene: Search GeneIP for patents involving ST6GAL2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ST6GAL2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
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Aliases for ST6GAL2
Databases for ST6GAL2
Disorders for ST6GAL2
Domains/Families for ST6GAL2
Drugs/Compounds for ST6GAL2
Expression for ST6GAL2
Function for ST6GAL2
Genomic Views for ST6GAL2
Intellectual Property for ST6GAL2
Medical News for ST6GAL2
Orthologs for ST6GAL2
Paralogs for ST6GAL2
Pathways/Interactions for ST6GAL2
Products for ST6GAL2
Proteins for ST6GAL2
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Summaries for ST6GAL2
Transcripts for ST6GAL2
Variants for ST6GAL2
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