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Aliases & Descriptionsfor STC1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions stanniocalcin 11 2 STC2 3 5 STC-12 3 stanniocalcin-12
Export aliases for STC1 gene to outside databases Previous GC identifers: GC08M023432 GC08M024052 GC08M023721 GC08M023755
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Summariesfor STC1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for STC1 : This gene encodes a secreted, homodimeric glycoprotein that is expressed in a wide variety of tissues and may have autocrine or paracrine functions. The gene contains a 5' UTR rich in CAG trinucleotide repeats. The encoded protein contains 11 conserved cysteine residues and is phosphorylated by protein kinase C exclusively on its serine residues. The protein may play a role in the regulation of renal and intestinal calcium and phosphate transport, cell metabolism, or cellular calcium/phosphate homeostasis. Overexpression of human stanniocalcin 1 in mice produces high serum phosphate levels, dwarfism, and increased metabolic rate. This gene has altered expression in hepatocellular, ovarian, and breast cancers. (provided by RefSeq) UniProtKB/Swiss-Prot: STC1_HUMAN, P52823 Function : Stimulates renal phosphate reabsorption, and could therefore prevent hypercalcemiaGene Wiki entry for STC1
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Genomic Viewsfor STC1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the STC1 gene promoter: CREB deltaCREB NF-kappaB NF-kappaB1 STAT5B GR-alpha GR-beta SRF Bach1 C/EBPalpha Other transcription factors Search SABiosciences Chromatin IP Primers for STC1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8p21-p11.2 Ensembl cytogenetic band: 8p21.2 HGNC cytogenetic band: 8p22-p12 STC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M022244: view genomic region
(about GC identifiers )
Start:
22,244,578 bp from pter
End:
22,257,479 bp from pter
Size:
12,902 bases
Orientation:
minus strand
1 alternative location : Chr 8- 23,699,428-23,712,320
RefSeq DNA sequence: NC_000008.10 NT_167187.1
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Proteinsfor STC1 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: STC1_HUMAN, P52823 (See
protein sequence )Recommended Name: Stanniocalcin-1 precursor Size : 247 amino acids; 27621 Da
Subunit : Homodimer; disulfide-linked (By similarity)
Subcellular location : SecretedExplore the universe of human proteins at neXtProt for STC1: NX_P52823
REFSEQ proteins: NP_003146.1 ENSEMBL proteins: ENSP00000290271 ENSP00000427932 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0005615 extracellular space
IEA --
About this table
STC1 for ontologies About GeneDecksing Antibodies for STC1: Assays for STC1:
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Protein
Domains/ Familiesfor STC1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
STC1 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry P52823 ProtoNet protein and cluster: P52823
1 Blocks protein family : IPB004978 Stanniocalcin UniProtKB/Swiss-Prot: STC1_HUMAN, P52823 Similarity : Belongs to the stanniocalcin family
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Gene Functionfor STC1 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: STC1_HUMAN, P52823 Function : Stimulates renal phosphate reabsorption, and could therefore prevent hypercalcemia
Genatlas biochemistry entry for STC1 :stanniocalcin,homolog of a calcium regulating hormone in bony fishes,putative regulator of mineral homeostasis,likely by stimulation of phosphate uptake by the renal tubule,expressed in both endochondral and membrane bone 1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005179 hormone activity
IEA --
About this table
STC1 for ontologies About GeneDecksing Animal Models: 4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Stc1) :
STC1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor STC1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for STC1 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for STC1 5 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
STC1 for ontologies About GeneDecksing
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Drugs & Compoundsfor STC1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
STC1 for compounds About GeneDecksing Browse Tocris compounds for STC1 10/12 Novoseek chemical compound relationships for STC1 gene (see all 12 )
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
calcium
57.3
94
9458778 (5), 7829534 (5), 12663264 (4), 18828660 (3) (see all 40 )
progesterone
26.6
6
15131261 (4), 14512426 (1), 16391703 (1)
estradiol
5.83
3
15131261 (2), 11832417 (1)
gtp
4.37
1
17092635 (1)
dexamethasone
3.71
8
18187254 (3), 11739016 (1), 12933688 (1)
estrogen
1.28
4
18355956 (1), 15062564 (1), 14503913 (1)
atp
0
8
20422040 (4), 17092635 (2)
glucose
0
1
19389948 (1)
steroid
0
2
10854706 (1), 15476934 (1)
potassium
0
1
16640646 (1)
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Transcriptsfor STC1 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for STC1 gene: NM_003155.2
Additional cDNA sequence: AK297734.1 AK309366.1 AK312589.1 BC029044.1 S50179.1 S50184.1 U25997.1 U46768.1
2 DOTS entries : DT.413453 DT.203705
24/186 AceView cDNA sequences (see all 186 ):
BX490288 AI564094 BM686190 CA424944 BF434960 CA842388 BM720350 AI492382 BE048556 CA434552 CB126047 BM727706 AU279405 BQ000658 AI634794 BU729854 AW001652 AW771275 AI521159 BM662762 AA912316 BE349059 BQ011881 CA842913
highest scoring ESTs for STC1 :U25997 AL710960 AU279405 AW954342 AW965863 BC029044 BI764976 BI918756 BM311087 BM311682 Unigene Cluster for STC1:
Stanniocalcin 1 Hs.25590 [show with all ESTs ] Unigene Representative Sequence: U25997 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000290271 (uc003xdw.1 ) ENST00000524323
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Expression for STC1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section STC1 expression in normal and diseased human tissues 1 / 2 / 3
7 probe-sets matching STC1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
41354_at2 , 3
U95-A
1
0.88
1.00
1.00
1.00
U25997
1.00
1.00
1.00
1
204597_x_at2 , 3
U133-A
1
0.73
1.00
--
--
NM_003155
0.60
1.00
0.82
1
204596_s_at2 , 3
U133-A
1
0.64
1.00
--
--
U46768
0.80
1.00
0.91
1
204595_s_at2 , 3
U133-A
1
0.46
1.00
--
--
AI300520
0.40
1.00
0.76
1
204597_x_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
204596_s_at2
U133Plus2
1
0.64
1.00
--
--
--
--
--
--
--
204595_s_at2
U133Plus2
1
0.46
1.00
--
--
--
--
--
--
--
About this table
STC1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTAATGACAG SOURCE GeneReport for Unigene cluster: Hs.25590 Expression variation in blood from EXPOLDB for STC1
UniProtKB/Swiss-Prot: STC1_HUMAN, P52823 Tissue specificity : Expressed in most tissues, with the highest levels in ovary, prostate, heart, kidney and thyroid.In the kidney, expression is confined to the nephron, specifically in the distal convoluted tubule and in the collecting tubule. Not detected in the brain, liver, spleen, peripheral blood leukocytes and adrenal medulla
SABiosciences Custom PCR Arrays for STC1
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Orthologsfor STC1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for STC1 gene from 5/8 species (see all 8 )
About this table Species with no ortholog for STC1 ENSEMBL Gene Tree for STC1 (if available)
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Paralogsfor STC1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for STC1 gene STC2 2
STC1 for paralogs About GeneDecksing
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Genomic Variantsfor STC1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 8 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for STC1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for STC1: --
QIAGEN SeqTarget long-range PCR primers for resequencing STC1
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Disorders & Mutationsfor STC1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
STC1 for disorders About GeneDecksing
OMIM: 601185 10/14 Novoseek disease relationships for STC1 gene (see all 14 )
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
hypercalcemia
58.6
10
8700837 (1), 9041047 (1), 12406069 (1), 11134638 (1) (see all 9 )
dwarfism
37.5
1
16377640 (1)
minimal residual disease
25.2
3
15383693 (2), 16637567 (1)
breast cancer
23
19
12684415 (6), 18355956 (2), 16637567 (1), 15062564 (1) (see all 8 )
fibrosarcoma
19
3
10947959 (3)
tumors
14.8
16
16109785 (3), 12684415 (2), 10717250 (2), 18355956 (1) (see all 11 )
pheochromocytoma
10.2
2
10937775 (1)
ovarian cancer
8.13
8
20484106 (3), 16109785 (1), 14503913 (1)
cancer
7.94
29
16109785 (3), 12684415 (3), 10717250 (3), 17395153 (3) (see all 12 )
metastasis
2.73
8
12684415 (1), 16330944 (1), 18355956 (1), 19515379 (1)
About this table Human Genome Epidemiology (HuGE) Navigator: STC1 (4 documents) Export disorders and mutations for STC1 gene to outside databases
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Medical Newsfor STC1 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor STC1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/109 PubMed articles for STC1 gene, integrated from 7 sources (see all 109 ): (articles sorted by number of sources associating them with STC1) Human stanniocalcin (STC): genomic structure, chromosomal localization, and the presence of CAG trinucleotide repeats. (PubMed id 9480753) 1 , 3, 7 Chang A.C....Reddel R.R. (1998) Human stanniocalcin: a possible hormonal regulator of mineral metabolism. (PubMed id 8700837) 1 , 2 , 7 Olsen H.S....Wagner G.F. (1996) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 1 , 2 Zhang Z. and Henzel W.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) A novel human cDNA highly homologous to the fish hormone stanniocalcin. (PubMed id 7489828) 1 , 2 Chang A.C.-M.... Reddel R.R. (1995) Paracrine regulation of ovarian granulosa cell differentiation by stanniocalcin (STC) 1: mediation through specific STC1 receptors. (PubMed id 15131261) 1 , 7 Luo C.W....Hsueh A.J. (2004) Human stanniocalcin-1 blocks TNF-alpha-induced monolayer permeability in human coronary artery endothelial cells. (PubMed id 18309109) 1 , 7 Chen C....Yao Q. (2008) Upregulated expression of stanniocalcin-1 during adipogenesis. (PubMed id 15149855) 1 , 7 Serlachius M. and Andersson L.C. (2004) Stanniocalcin 1 and ovarian tumorigenesis. (PubMed id 20484106) 1 , 7 Liu G....Liu J. (2010 Jun 2) Low-resolution structural studies of human Stanniocal cin-1. (PubMed id 19712479) 1 , 7 Trindade D.M....Kobarg J. (2009)
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External Searches for STC1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing STC1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing STC1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing STC1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for STC1 gene: Search GeneIP for patents involving STC1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor STC1 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
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Recombinant Protein for STC1
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Aliases for STC1
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