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Aliases & Descriptionsfor TACSTD2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions tumor-associated calcium signal transducer 21 2 GA73312 TROP21 2 3 5 pancreatic carcinoma marker protein GA73312 GA733-11 2 3 GP502 M1S12 3 5 membrane component, chromosome 1, surface marker 12 EGP-11 2 40kD glycoprotein, identified by monoclonal antibody GA7332 Cell surface glycoprotein Trop-22 3 epithelial glycoprotein-12 Pancreatic carcinoma marker protein GA733-12 3 EGP12 Membrane component chromosome 1 surface marker 12 3 gastrointestinal tumor-associated antigen GA73312 cell surface glycoprotein TROP22
Export aliases for TACSTD2 gene to outside databases Previous GC identifers: GC01M058957 GC01M057955 GC01M058398 GC01M058411 GC01M058412 GC01M058752 GC01M058813 GC01M059041
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Summariesfor TACSTD2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TACSTD2 : This intronless gene encodes a carcinoma-associated antigen. This antigen is a cell surface receptor that transduces calcium signals. Mutations of this gene have been associated with gelatinous drop-like corneal dystrophy. UniProtKB/Swiss-Prot: TACD2_HUMAN, P09758 Function : May function as a growth factor receptorGene Wiki entry for TACSTD2
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Genomic Viewsfor TACSTD2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TACSTD2 gene promoter: Nkx2-2 deltaCREB CREB ATF6 NF-kappaB1 AhR Arnt POU3F2 CUTL1 LCR-F1 Other transcription factors Search SABiosciences Chromatin IP Primers for TACSTD2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for TACSTD2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p32 Ensembl cytogenetic band: 1p32.1 HGNC cytogenetic band: 1p32 TACSTD2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M057151: view genomic region
(about GC identifiers )
Start:
57,151,670 bp from pter
End:
57,153,741 bp from pter
Size:
2,072 bases
Orientation:
minus strand
1 alternative location : Chr 1- 59,041,099-59,043,166
RefSeq DNA sequence: NC_000001.10 NT_032977.9
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Proteinsfor TACSTD2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: TACD2_HUMAN, P09758 (See
protein sequence )Recommended Name: Tumor-associated calcium signal transducer 2 precursor Size : 323 amino acids; 35709 Da
Subcellular location : Membrane; Single-pass type I membrane protein
Secondary accessions : Q15658 Q6FG48 Q7Z7Q4 Q96QD2Explore the universe of human proteins at neXtProt for TACSTD2: NX_P09758 Post-translational modifications:
The N-terminus is blocked1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_002344.2 ENSEMBL proteins: ENSP00000360269 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
TACSTD2 for ontologies About GeneDecksing Antibodies for TACSTD2: Assays for TACSTD2:
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Protein
Domains/ Familiesfor TACSTD2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TACSTD2 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry P09758 ProtoNet protein and cluster: P09758
1 Blocks protein family : IPB000716 Thyroglobulin type-1 UniProtKB/Swiss-Prot: TACD2_HUMAN, P09758 Similarity : Belongs to the EPCAM familySimilarity : Contains 1 thyroglobulin type-1 domain
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Gene Functionfor TACSTD2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: TACD2_HUMAN, P09758 Function : May function as a growth factor receptor
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
About this table
TACSTD2 for ontologies About GeneDecksing
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Pathways & Interactionsfor TACSTD2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for TACSTD2 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TACSTD2 4 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
TACSTD2 for ontologies About GeneDecksing
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Drugs & Compoundsfor TACSTD2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
TACSTD2 for compounds About GeneDecksing Browse Tocris compounds for TACSTD2 3 Novoseek chemical compound relationships for TACSTD2 gene
About this table
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Transcriptsfor TACSTD2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for TACSTD2 gene: NM_002353.2
Additional cDNA sequence: BC009409.1 BT007255.1 CR542260.1 X13425.1 X77753.1
7 DOTS entries : DT.450146 DT.95276450 DT.99927981 DT.121426551 DT.97813372 DT.92440454 DT.95183330
24/302 AceView cDNA sequences (see all 302 ):
AI004919 AW070311 AW261984 AW006838 AI738946 AI741714 BF916400 W68600 BE122900 BE736713 AA371367 BM825095 CB850579 BG260715 AA035667 BU683241 BM129041 H22330 AA468519 BG259850 H29722 AA041184 AA056370 AA429148
highest scoring ESTs for TACSTD2 :X77753 AA045944 AA115151 AA159538 AA235686 AA291648 AA320951 AA401708 AA401961 AA411472 Unigene Cluster for TACSTD2:
Tumor-associated calcium signal transducer 2 Hs.23582 [show with all ESTs ] Unigene Representative Sequence: X77753 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000371225 (uc001cyz.3 )
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Expression for TACSTD2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section TACSTD2 expression in normal and diseased human tissues 1 / 2 / 3
6 probe-sets matching TACSTD2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
291_s_at2 , 3
U95-A
1
0.94
1.00
1.00
1.30
J04152
0.20
1.00
0.72
1
41286_at2 , 3
U95-A
1
0.50
1.00
0.89
0.74
X77753
1.00
1.00
1.00
1
202286_s_at2 , 3
U133-A
1
0.82
1.00
--
--
J04152
0.20
1.00
0.72
1
202285_s_at2 , 3
U133-A
1
0.64
1.00
--
--
AI627697
0.80
1.00
0.91
1
202286_s_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
202285_s_at2
U133Plus2
1
0.64
1.00
--
--
--
--
--
--
--
About this table
TACSTD2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCCTACCCGA SOURCE GeneReport for Unigene cluster: Hs.23582 Expression variation in blood from EXPOLDB for TACSTD2
UniProtKB/Swiss-Prot: TACD2_HUMAN, P09758 Tissue specificity : Placenta, pancreatic carcinoma cell lines
SABiosciences Custom PCR Arrays for TACSTD2
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Orthologsfor TACSTD2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for TACSTD2 gene from 5/7 species (see all 7 )
About this table Species with no ortholog for TACSTD2 ENSEMBL Gene Tree for TACSTD2 (if available)
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Paralogsfor TACSTD2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for TACSTD2 gene EPCAM 2
TACSTD2 for paralogs About GeneDecksing
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Genomic Variantsfor TACSTD2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 1 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for TACSTD2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TACSTD2: --
QIAGEN SeqTarget long-range PCR primers for resequencing TACSTD2
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Disorders & Mutationsfor TACSTD2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TACSTD2 for disorders About GeneDecksing
OMIM: 137290 disorders : 204870 UniProtKB/Swiss-Prot: TACD2_HUMAN, P09758
Defects in TACSTD2 are the cause of gelatinous drop-like corneal dystrophy (GDLD) [MIM:204870]; also known as lattice corneal dystrophy type III. GDLD is an autosomal recessive disorder characterized by grayish corneal amyloid deposits that cause severe visual impairment
9 Novoseek disease relationships for TACSTD2 gene
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
amyloidosis, corneal
97.3
15
11004271 (4), 15295654 (2), 17653040 (2), 19693293 (2) (see all 8 )
corneal dystrophy
87.9
10
17721311 (2), 12614764 (2), 11687514 (2), 15013888 (1) (see all 7 )
lattice corneal dystrophy
81
1
12700042 (1)
gastrointestinal carcinoma
64
1
11058587 (1)
ovarian carcinoma
37.2
1
19053170 (1)
carcinoma
30
5
7665234 (2), 2333300 (1), 15355929 (1), 14999147 (1)
pancreatic cancer
17.4
1
10473862 (1)
tumors
1.99
2
9586666 (1), 10881691 (1)
adenocarcinoma
0
1
16232198 (1)
About this table Human Gene Mutation Database (HGMD) : TACSTD2 Genetic Association Database (GAD): TACSTD2 Export disorders and mutations for TACSTD2 gene to outside databases
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Medical Newsfor TACSTD2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor TACSTD2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/64 PubMed articles for TACSTD2 gene, integrated from 7 sources (see all 64 ): (articles sorted by number of sources associating them with TACSTD2) Retroposition in a family of carcinoma-associated antigen genes. (PubMed id 8382772) 1 , 2 , 3, 7 Linnenbach A.J.... Huebner K. (1993) A novel mutation in the M1S1 gene responsible for gelatinous droplike corneal dystrophy. (PubMed id 11687514) 1 , 2 , 7 Tasa G.... Lang A. (2001) Cloning of the gene encoding Trop-2, a cell-surface glycoprotein expressed by human carcinomas. (PubMed id 7665234) 1 , 2 , 7 Fornaro M.... Alberti S. (1995) Compound heterozygous mutations of M1S1 gene in gelatinous droplike corneal dystrophy. (PubMed id 15013888) 1 , 4, 7 Tian X....Liu Z. (2004) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 , 2 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Assignment of TACSTD1 (alias TROP1, M4S1) to human chromosome 2p21 and refinement of mapping of TACSTD2 (alias TROP2, M1S1) to human chromosome 1p32 by in situ hybridization. (PubMed id 11306819) 1 , 3 Calabrese G....Alberti S. (2001) Identification of the gene responsible for gelatinous drop-like corneal dystrophy. (PubMed id 10192395) 1 , 2 Tsujikawa M.... Nakamura Y. (1999) Sequence investigation of the major gastrointestinal tumor-associated antigen gene family, GA733. (PubMed id 2911574) 1 , 2 Linnenbach A.J.... Koprowski H. (1989) Four mutations (three novel, one founder) in TACSTD2 among Iranian GDLD patients. (PubMed id 17898270) 1 , 7 Alavi A....Amini S.S. (2007)
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External Searches for TACSTD2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TACSTD2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TACSTD2 gene
(According to HUGE )
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Specialized Databases showing TACSTD2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for TACSTD2 gene: Search GeneIP for patents involving TACSTD2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TACSTD2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for TACSTD2
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