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TAS2R1 Gene

protein-coding   GIFtS: 45

GC05M009612
taste receptor, type 2, member 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases & Descriptions
taste receptor, type 2, member 11 2     taste receptor, family B, member 72
TRB71 2 3 5     MGC1267802
T2R11 2 3 5     taste receptor type 2 member 12
Taste receptor family B member 72 3     MGC1267782

External Ids:    HGNC: 149091   Entrez Gene: 508342   Ensembl: ENSG000001697777   UniProtKB: Q9NYW73   

Export aliases for TAS2R1 gene to outside databases

Previous GC identifers: GC05M009797 GC05M009661 GC05M009681 GC05M009682


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TAS2R1:
This gene encodes a member of a family of candidate taste receptors that are members of the G protein-coupled receptor
superfamily and that are specifically expressed by taste receptor cells of the tongue and palate epithelia. This
intronless taste receptor gene encodes a 7-transmembrane receptor protein, functioning as a bitter taste receptor.
This gene is mapped to chromosome 5p15, the location of a genetic locus (PROP) that controls the detection of the
bitter compound 6-n-propyl-2-thiouracil. (provided by RefSeq)

UniProtKB/Swiss-Prot: TA2R1_HUMAN, Q9NYW7
Function: Receptor that may play a role in the perception of bitterness and is gustducin-linked. May play a role in
sensing the chemical composition of the gastrointestinal content. The activity of this receptor may stimulate alpha
gustducin, mediate PLC-beta-2 activation and lead to the gating of TRPM5

Gene Wiki entry for TAS2R1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TAS2R1 gene promoter:
         HOXA9B   Meis-1   PPAR-gamma2   PPAR-gamma1   FOXJ2 (long isoform)   CHOP-10   C/EBPalpha   Cdc5   Tal-1beta   POU2F1   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for TAS2R1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5p15   Ensembl cytogenetic band:  5p15.31   HGNC cytogenetic band: 5p15

TAS2R1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TAS2R1 gene location

GeneLoc gene densities for chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M009612:  view genomic region     (about GC identifiers)

Start:
9,612,803 bp from pter
End:
9,614,157 bp from pter
Size:
1,355 bases
Orientation:
minus strand

1 alternative location:
Chr5- 9,629,109-9,630,463     
RefSeq DNA sequence:
NC_000005.9  NT_006576.16  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
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UniProtKB/Swiss-Prot: TA2R1_HUMAN, Q9NYW7 (See protein sequence)
Recommended Name: Taste receptor type 2 member 1  
Size: 299 amino acids; 34333 Da
Subcellular location: Membrane; Multi-pass membrane protein
Miscellaneous: Most taste cells may be activated by a limited number of bitter compounds; individual taste cells can
discriminate among bitter stimuli
Secondary accessions: Q646G8

Explore the universe of human proteins at neXtProt for TAS2R1: NX_Q9NYW7 

REFSEQ proteins: NP_062545.1  

ENSEMBL proteins: 
ENSP00000371932 


Human Recombinant Proteins 
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2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0016020 membrane IEA--
GO:0016021 integral to membrane NAS--
About this table

TAS2R1 for ontologies           About GeneDecksing



Antibodies for TAS2R1: 
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Uscn ELISAs and CLIAs for TAS2R1 


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

TAS2R1 for domains           About GeneDecksing

1 InterPro domain/family:
 IPR007960 TAS2_rcpt

Graphical View of Domain Structure for InterPro Entry Q9NYW7

ProtoNet protein and cluster: Q9NYW7

UniProtKB/Swiss-Prot: TA2R1_HUMAN, Q9NYW7
Similarity: Belongs to the G-protein coupled receptor T2R family


(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: TA2R1_HUMAN, Q9NYW7
Function: Receptor that may play a role in the perception of bitterness and is gustducin-linked. May play a role in
sensing the chemical composition of the gastrointestinal content. The activity of this receptor may stimulate alpha
gustducin, mediate PLC-beta-2 activation and lead to the gating of TRPM5

Inhib.
RNA:
    
Browse for Gene Knock-down Tools from Millipore
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Sigma-Aldrich esiRNA and siRNA for TAS2R1
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OriGene siRNA: TAS2R1
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of TAS2R1 
miRNA:Browse microRNA Mimics at Sigma-Aldrich
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of TAS2R1 
Search SABiosciences for Assays for microRNAs that regulate TAS2R1

Gene
Editing:
Browse CompoZr Knockout ZFN at Sigma-Aldrich 

Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
Browse iPSC Reprogramming Factors at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: TAS2R1
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: TAS2R1
OriGene untagged cDNA clones in CMV expression vector: TAS2R1
Browse 3'-UTR reporter clones for miRNA target validation 
Browse MicroRNA Expression Plasmids 
GenScript cDNA clone with any tag delivered in your preferred vector: TAS2R1 
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Cell
Lines:
  
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3 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004872 receptor activity IEA--
GO:0004930 G-protein coupled receptor activity ----
GO:0008527 taste receptor activity TAS10761934
About this table

TAS2R1 for ontologies           About GeneDecksing


(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section


TAS2R1 for pathways           About GeneDecksing

1 Kegg Pathway  (Kegg details for TAS2R1):
    hsa04742 Taste transduction

    SABiosciences Custom Pathway-Focused PCR Arrays for TAS2R1 

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TAS2R1

4 Gene Ontology (GO) biological process terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0007186 G-protein coupled receptor protein signaling pathway TAS10761934
GO:0007635 chemosensory behavior TAS10761934
GO:0050896 response to stimulus IEA--
GO:0050909 sensory perception of taste IEA--
About this table

TAS2R1 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section
Browse Small Molecules at Sigma-Aldrich
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for TAS2R1


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib.
RNA:
     
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich esiRNA and siRNA for TAS2R1
Sigma-Aldrich shRNA Panels and shRNA for TAS2R1
OriGene 29mer shRNA kits in GFP-retroviral vector: TAS2R1
OriGene shRNA RFP: TAS2R1
OriGene basic RS shRNA: TAS2R1
OriGene siRNA: TAS2R1
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of TAS2R1 
miRNA: Browse microRNA Mimics at Sigma-Aldrich
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of TAS2R1 
Search SABiosciences for Assays for microRNAs that regulate TAS2R1
Clones: Browse FLAG tag genes at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: TAS2R1
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: TAS2R1
OriGene untagged cDNA clones in CMV expression vector: TAS2R1
Browse 3'-UTR reporter clones for miRNA target validation 
Browse OriGene MicroRNA Expression Plasmids 
GenScript cDNA clone with any tag delivered in your preferred vector: TAS2R1 
Primers: OriGene genome-wide validated SYBR primer pairs: TAS2R1
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for TAS2R1: PPH02518A

REFSEQ mRNAs for TAS2R1 gene: 

NM_019599.2  

Additional cDNA sequence: 

BC095521.1 BC101729.1 BC101731.1 

1 DOTS entry:

DT.102822724 

21 AceView cDNA sequences:

NM_019599 BG192000 BX112217 AI190879 CN839897 CN836511 AF009306 CN843110 
CN835432 CN839536 CN835976 AI191595 CN835406 CN835918 CN839562 BG209561 
AA416581 BG203110 BX090205 CN836616 CN843196 

highest scoring ESTs for TAS2R1:

BG209561 CN835406 CN835432 CN835976 CN836511 CN836616 CN839536 CN839562 CN843110 CN839712 

Unigene Cluster for TAS2R1:

Taste receptor, type 2, member 1
Hs.567492  [show with all ESTs]
Unigene Representative Sequence: NM_019599


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000382492(uc003jem.1)

(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

TAS2R1 expression in normal and diseased human tissues

1  / 2  / 3

2 probe-sets matching TAS2R1 gene

Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
221324_at2, 3 U133-A 1 0.55 1.00 -- -- NM_019599 0.60 0.83 0.73 1
221324_at2 U133Plus2 1 0.55 1.00 -- -- -- -- -- -- --
About this table
Data from Genenote  (Publications) and GNF BioGPS
    About these images
TAS2R1 gene expression
TAS2R1 gene electronic northern expression
TAS2R1 gene sage expression
About these images

CGAP SAGE TAG: TCCCCTTCAG

SOURCE GeneReport for Unigene cluster: Hs.567492

UniProtKB/Swiss-Prot: TA2R1_HUMAN, Q9NYW7
Tissue specificity: Expressed in subsets of taste receptor cells of the tongue and palate epithelium and exclusively in
gustducin-positive cells

Primers: OriGene genome-wide validated SYBR primer pairs: TAS2R1
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for TAS2R1: PPH02518A
    SABiosciences Custom PCR Arrays for TAS2R1 


(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for TAS2R1 gene from 4 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
TAS2R11   -- taste receptor, type 2, member 1 99.11(n)
97.99(a)
462383  XM_518198.1  XP_518198.1 
cow
(Bos taurus)
TAS2R11   -- taste receptor, type 2, member 1 70.28(n)
52.54(a)
664649  NM_001046636.1  NP_001040101.1 
rat
(Rattus norvegicus)
Tas2r1191   -- taste receptor, type 2, member 119 66.44(n)
51.69(a)
78979  NM_023993.1  NP_076483.1 
mouse
(Mus musculus)
Tas2r1191 , 5 15 (13.02 cM)5
taste receptor, type 2, member 1191, 5 66.22(n)1
52.36(a)1
572541  NM_020503.11  NP_065249.11 
 AF2271495  BC1118115  (see all 9)
About this table        Species with no ortholog for TAS2R1

ENSEMBL Gene Tree for TAS2R1 (if available)

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
Paralogs for TAS2R1 gene
TAS2R412  TAS2R52  TAS2R392  TAS2R382  TAS2R402  TAS2R42  TAS2R162  TAS2R602  

TAS2R1 for paralogs           About GeneDecksing



(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

10/37 NCBI SNPs in TAS2R1 are shown (see all 37)
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidChr 5 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
----------
rs414691,2
C,F,9629813(-) CGTCCA/GTCACC 2 H R mis1 ref1 ese316Minor allele frequency- C:0.00MN NA EA NS WA 2764
rs414701,2
C,F,9630187(-) ACTTTA/GTAACT 1 -- ut516Minor allele frequency- G:0.15NA PA NS EA 506
rs22342281,2
C,9630515(-) TATTCA/GTAGTA 1 -- ng51 tfbs34Minor allele frequency- G:0.03NS EA WA 310
rs22342291,2
H9630216(-) AAGAGC/TGTGAA 1 -- ut514Minor allele frequency- T:0.00NS EA 418
rs22342301,2
--9630207(-) AACAAA/CCCAAC 1 -- ut510--------
rs22342311,2
C9630017(-) GGCTCC/TGCTGG 2 P L ref1 mis1 ese34Minor allele frequency- T:0.00NS EA 402
rs22342321,2
C,F,9629723(-) GATTTG/ATGTTT 2 /Y /C mis1 ref1 ese34Minor allele frequency- A:0.02NS EA 406
rs22342331,2
C,F,9629529(-) ACACCC/TGGCAA 2 R W ref1 mis1 ese313Minor allele frequency- T:0.12EA NS NA 2464
rs22342341,2
C,9629470(-) ATCAGC/TGCGTT 2 S ref1 syn1 ese35Minor allele frequency- T:0.00NS EA WA 452
rs22342351,2
C,F,O,9629295(-) CTAAAT/CTGAAA 2 /L syn1 ref15Minor allele frequency- C:0.02EA NS NA 438
About this table

HapMap Linkage Disequilibrium images for TAS2R1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for TAS2R1: --

QIAGEN SeqTarget long-range PCR primers for resequencing TAS2R1 

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section

TAS2R1 for disorders           About GeneDecksing

OMIM: 604796

Human Genome Epidemiology (HuGE) Navigator: TAS2R1 (1 document)

Export disorders and mutations for TAS2R1 gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
About This Section

10/14 PubMed articles for TAS2R1 gene, integrated from 7 sources (see all 14):
(articles sorted by number of sources associating them with TAS2R1)
  1. A novel family of mammalian taste receptors. (PubMed id 10761934)1, 2, 3 Adler E....Zuker C.S. (2000)
  2. Evolution of bitter taste receptors in humans and apes. (PubMed id 15496549)1, 2 Fischer A.... Paeaebo S. (2005)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  4. Coding of sweet, bitter, and umami tastes: different receptor cells sharing similar signaling pathways. (PubMed id 12581520)1, 2 Zhang Y.... Ryba N.J. (2003)
  5. Molecular mechanisms of bitter and sweet taste transduction. (PubMed id 11696554)1, 2 Margolskee R.F. (2002)
  6. Receptors for bitter and sweet taste. (PubMed id 12139982)1, 2 Montmayeur J.-P. and Matsunami H. (2002)
  7. A family of candidate taste receptors in human and mo use. (PubMed id 10766242)1, 3 Matsunami H....Buck L.B. (2000)
  8. T2Rs function as bitter taste receptors. (PubMed id 10761935)1, 2 Chandrashekar J.... Ryba N.J.P. (2000)
  9. Bitter taste receptor T2R1 is activated by dipeptides and tripeptides. (PubMed id 20599705)1 Upadhyaya J....Chelikani P. (2010)
  10. A genome-wide linkage and association scan reveals no vel loci for autism. (PubMed id 19812673)1 Weiss L.A. and Arking D.E. (2009)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
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  Query String
PubMed
OMIM
NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 50834 HGNC: 14909 AceView: TAS2R1 Ensembl:ENSG00000169777 euGenes: HUgn50834
ECgene: TAS2R1 Kegg: 50834 H-InvDB: TAS2R1

(According to HUGE)
About This Section
  --

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
About This Section
Patent Information for TAS2R1 gene:
Search GeneIP for patents involving TAS2R1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
About This Section

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