Aliases &
Descriptions
for TEX28 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| testis expressed 281 2 | | fTEX1 2 | | CXorf22 3 | | chromosome X open reading frame 21 | | testis-specific protein TEX282 |
Export aliases for TEX28 gene to outside databasesPrevious GC identifers: GC0XM153154 GC0XM153498 |
Summaries
for TEX28 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for TEX28 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for TEX28
Other transcription factors
Search SABiosciences Chromatin IP Primers for TEX28
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for TEX28  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xq28 Ensembl cytogenetic band: Xq28 HGNC cytogenetic band: Xq28TEX28 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XM142075: view genomic region
(about GC identifiers)
Start:
|
142,075,136 bp from pter |
End:
|
142,100,672 bp from pter |
Size:
|
25,537 bases |
Orientation:
|
minus strand |
1 alternative location:
| ChrX- 153,498,930-153,523,796 |
RefSeq DNA sequence:- NC_000023.10 NT_167198.1
|
Proteins
for TEX28 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: TEX28_HUMAN, O15482 (See
protein sequence)Recommended Name: Testis-specific protein TEX28 Size: 410 amino acids; 46131 Da
Subcellular location: Membrane; Single-pass membrane protein (Potential)
Secondary accessions: B1B1E8 D3DWW5Explore the universe of human proteins at neXtProt for TEX28: NX_O15482
Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001577.1
ENSEMBL proteins: ENSP00000358942 ENSP00000355323 ENSP00000406419 ENSP00000388810
Human Recombinant Proteins
3 Gene Ontology (GO) cellular component terms (GO ID links to tree view): About this table
TEX28 for ontologies About GeneDecksing
Antibodies for TEX28:
Assays for TEX28: |
Protein
Domains/
Families
for TEX28 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
TEX28 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry O15482ProtoNet protein and cluster: O15482 UniProtKB/Swiss-Prot: TEX28_HUMAN, O15482Similarity: Belongs to the TEX28 family |
Gene Function
for TEX28 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
1 Gene Ontology (GO) molecular function term (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003674 | molecular_function |
ND | -- |
About this table
TEX28 for ontologies About GeneDecksing
|
Pathways & Interactions
for TEX28 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for TEX28
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TEX28
1 Interacting protein for TEX28 (O154822) via UniProtKB, MINT, and/or STRINGAbout this table
2 Gene Ontology (GO) biological process terms (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007165 | signal transduction |
-- | -- | | GO:0008150 | biological_process |
ND | -- |
About this table
TEX28 for ontologies About GeneDecksing
|
Drugs & Compounds
for TEX28 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for TEX28
|
Transcripts
for TEX28 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for TEX28 gene: NM_001586.1 Additional cDNA sequence: BC026183.1 DQ655913.2 U93720.1 2 DOTS entries: DT.304154 DT.95288742 10 AceView cDNA sequences: BI825689 NM_001586 U93720 BI826964 BX280786 BM728212 BC026183 BI459565 BM681381 AW629285 Unigene Cluster for TEX28: Testis expressed 28 Hs.672606 [show with all ESTs]Unigene Representative Sequence: BC026183
GeneLoc Exon Structure
4 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000369926(uc004fkf.2 uc010nut.1) ENST00000361930(uc004fke.2)
ENST00000428625 ENST00000439665
|
Expression
for TEX28 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| TEX28 expression in normal and diseased human tissues
1 / 2 3 probe-sets matching TEX28 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 31715_at2
|
U95-A |
3 |
0.62 |
0.56 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
| 207364_at2
|
U133-A |
3 |
0.82 |
0.63 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 207364_at2
|
U133Plus2 |
3 |
0.82 |
0.63 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
TEX28 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: CTGATGCTGA
SOURCE GeneReport for Unigene cluster: Hs.672606
UniProtKB/Swiss-Prot: TEX28_HUMAN, O15482Tissue specificity: Testis specific
SABiosciences Custom PCR Arrays for TEX28
|
Orthologs
for TEX28 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TEX28 gene from 5 species
About this table Species with no ortholog for TEX28
ENSEMBL Gene Tree for TEX28 (if available) |
Paralogs
for TEX28 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for TEX28 gene
- TEX28P12 TEX28P22 TMCC12 TMCC32 TMCC22
TEX28 for paralogs About GeneDecksing
|
Genomic Variants
for TEX28 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr X pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for TEX28 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 4 variations for TEX28
4 CNVs: 97108 83868 37014 74085 | | QIAGEN SeqTarget long-range PCR primers for resequencing TEX28 |
|
Disorders & Mutations
for TEX28 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
TEX28 for disorders About GeneDecksing
OMIM: 300092
Export disorders and mutations for TEX28 gene to outside databases
|
Medical News
for TEX28 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for TEX28 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
8 PubMed articles for TEX28 gene integrated from 7 sources:
(articles sorted by number of sources associating them with TEX28)- Identification of a gene within the tandem array of red and green color pigment genes. (PubMed id 9268643)1, 2, 3 Hanna M.C.... Kirkness E.F. (1997)
- An insertion/deletion TEX28 polymorphism and its appl ication to analysis of red/green visual pigment gene arrays. (PubMed id 15378397)1, 3, 7 Ueyama H....Yamade S. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Evaluation of the X-linked high-grade myopia locus (MYP1) with cone dysfunction and color vision deficiencies. (PubMed id 19098318)1, 7 Metlapally R....Young T.L. (2009)
- Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. (PubMed id 17567994)1 Denoeud F....Reymond A. (2007)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
- Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (2005)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for TEX28 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing TEX28 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing TEX28 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TEX28 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for TEX28 gene:
Search GeneIP for patents involving TEX28
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for TEX28 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
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 |  |  |  | |
| |  | Search Tocris compounds for TEX28 |
| |  |  |  |  | | | | |
 | | | ELISAs and CLIAs for TEX28 |
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