TFAP4 Gene
protein-coding GIFtS : 52
GC16M004247
transcription factor AP-4 (activating enhancer binding protein 4) (Previous name: transcription factor AP-4 (activating enhancer-binding protein 4) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptionsfor TFAP4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions transcription factor AP-4 (activating enhancer binding protein 4)1 2 Activating enhancer-binding protein 42 3 bHLHc411 2 3 Class C basic helix-loop-helix protein 412 3 AP-41 2 transcription factor AP-42 transcription factor AP-4 (activating enhancer-binding protein 4)1 2 BHLHC413
Export aliases for TFAP4 gene to outside databases Previous GC identifers: GC16M004330 GC16M004307
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Summariesfor TFAP4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TFAP4 : Transcription factors of the basic helix-loop-helix-zipper (bHLH-ZIP) family contain a basic domain, which is used for DNA binding, and HLH and ZIP domains, which are used for oligomerization. Transcription factor AP4 activates both viral and cellular genes by binding to the symmetrical DNA sequence CAGCTG (Mermod et al., 1988 (PubMed 2833704); Hu et al., 1990 (PubMed 2123466)).(supplied by OMIM) UniProtKB/Swiss-Prot: TFAP4_HUMAN, Q01664 Function : Transcription factor that activates both viral and cellular genes by binding to the symmetrical DNA sequence5'-CAGCTG-3' Gene Wiki entry for TFAP4
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Genomic Viewsfor TFAP4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TFAP4 gene promoter: GATA-1 CREB deltaCREB GATA-2 MyoD C/EBPalpha AP-2gamma AP-2alphaA TBP TFIID Other transcription factors Search SABiosciences Chromatin IP Primers for TFAP4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for TFAP4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16p13 Ensembl cytogenetic band: 16p13.3 HGNC cytogenetic band: 16p13 TFAP4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16M004247: view genomic region
(about GC identifiers )
Start:
4,274,201 bp from pter
End:
4,289,950 bp from pter
Size:
15,750 bases
Orientation:
minus strand
1 alternative location : Chr 16- 4,307,187-4,323,001
RefSeq DNA sequence: NC_000016.9 NT_010393.16
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Proteinsfor TFAP4 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: TFAP4_HUMAN, Q01664 (See
protein sequence )Recommended Name: Transcription factor AP-4 Size : 338 amino acids; 38726 Da
Subunit : Efficient DNA binding requires dimerization with another bHLH protein. Homodimer
Subcellular location : Nucleus
Secondary accessions : O60409Explore the universe of human proteins at neXtProt for TFAP4: NX_Q01664 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_003214.1 ENSEMBL proteins: ENSP00000204517 ENSP00000379987 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
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TFAP4 for ontologies About GeneDecksing Antibodies for TFAP4: Assays for TFAP4:
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Protein
Domains/ Familiesfor TFAP4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TFAP4 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q01664 ProtoNet protein and cluster: Q01664
1 Blocks protein family : IPB001092 Basic helix-loop-helix dimerization domain bHLH UniProtKB/Swiss-Prot: TFAP4_HUMAN, Q01664 Similarity : Contains 1 basic helix-loop-helix (bHLH) domain
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Gene Functionfor TFAP4 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: TFAP4_HUMAN, Q01664 Function : Transcription factor that activates both viral and cellular genes by binding to the symmetrical DNA sequence5'-CAGCTG-3'
Genatlas biochemistry entry for TFAP4 :transcription factor AP-4,activating enhancer binding protein 4,involved in signal-mediated trafficking of integral membrane proteins 5/15 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 15 ):
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TFAP4 for ontologies About GeneDecksing
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Pathways & Interactionsfor TFAP4 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for TFAP4 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TFAP4 5/18 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 18 ):
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TFAP4 for ontologies About GeneDecksing
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Drugs & Compoundsfor TFAP4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
TFAP4 for compounds About GeneDecksing Browse Tocris compounds for TFAP4 1 Novoseek chemical compound relationship for TFAP4 gene
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
leucine
35.6
1
2123466 (1)
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Transcriptsfor TFAP4 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for TFAP4 gene: NM_003223.2
Additional cDNA sequence: BC010576.1 CR541726.1 CR605422.1 CR610803.1 S73885.1 X57435.1
6 DOTS entries : DT.455041 DT.100720185 DT.100810845 DT.95107157 DT.100763870 DT.91983108
24/73 AceView cDNA sequences (see all 73 ):
CR541726 BU159415 BC010576 BQ441928 BC039696 BM450579 CR610803 AL527330 BQ216830 CR605422 BE254143 BX348748 BX473142 BX333075 AI052469 BX112687 BM755885 BX371672 AA314453 CA314763 BU172406 BV198722 S73885 BX389541
highest scoring ESTs for TFAP4 :S73885 AA216567 BC010576 BE254143 BF529726 BG479910 BI766776 BM450579 BU159415 BU171481 Unigene Cluster for TFAP4:
Transcription factor AP-4 (activating enhancer binding protein 4) Hs.513305 [show with all ESTs ] Unigene Representative Sequence: S73885 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000204517 (uc010uxg.1 ) ENST00000396765
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Expression for TFAP4 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section TFAP4 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching TFAP4 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
39638_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
S73885
1.00
1.00
1.00
1
205688_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_003223
0.60
1.00
0.82
1
205688_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
TFAP4 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTTGGGGGTA SOURCE GeneReport for Unigene cluster: Hs.513305 Expression variation in blood from EXPOLDB for TFAP4
SABiosciences Custom PCR Arrays for TFAP4
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Orthologsfor TFAP4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for TFAP4 gene from 5/7 species (see all 7 )
About this table Species with no ortholog for TFAP4 ENSEMBL Gene Tree for TFAP4 (if available)
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Paralogsfor TFAP4 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor TFAP4 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 16 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for TFAP4 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for TFAP4 1 CNV : 72431
QIAGEN SeqTarget long-range PCR primers for resequencing TFAP4
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Disorders & Mutationsfor TFAP4 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TFAP4 for disorders About GeneDecksing
OMIM: 600743 Export disorders and mutations for TFAP4 gene to outside databases
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Medical Newsfor TFAP4 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor TFAP4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/32 PubMed articles for TFAP4 gene, integrated from 7 sources (see all 32 ): (articles sorted by number of sources associating them with TFAP4) Transcription factor AP-4 contains multiple dimerization domains that regulate dimer specificity. (PubMed id 2123466) 1 , 2 , 3, 7 Hu Y.-F.... Tjian R. (1990) Role of flanking E box motifs in human immunodeficiency virus type 1 TATA element function. (PubMed id 7933101) 1 , 2 , 7 Ou S.H.... Gaynor R.B. (1994) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 , 2 Olsen J.V....Mann M. (2006) The sequence and analysis of duplication-rich human chromosome 16. (PubMed id 15616553) 1 , 2 Martin J.... Pennacchio L.A. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 1 , 2 Beausoleil S.A....Gygi S.P. (2004) Complementary quantitative proteomics reveals that tr anscription factor AP-4 mediates E-box-dependent complex formation for transcri ptional repression of HDM2. (PubMed id 19505873) 1 , 7 Ku W.C....Chen Y.J. (2009) Transcription factor AP-4 is a ligand for immunoglobulin-kappa promoter E-box elements. (PubMed id 11171123) 1 , 7 Aranburu A....Leanderson T. (2001) The helix-loop-helix proteins dAP-4 and daughterless bind both in vitro and in vivo to SEBP3 sites required for transcriptional activation of the Drosophila gene Sgs-4. (PubMed id 10438607) 1 , 7 King-Jones K....Lehmann M. (1999) Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332) 2 Mayya V.... Han D.K. (2009)
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External Searches for TFAP4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TFAP4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TFAP4 gene
(According to HUGE )
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Specialized Databases showing TFAP4 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for TFAP4 gene: Search GeneIP for patents involving TFAP4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TFAP4 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for TFAP4
ELISAs and CLIAs for TFAP4
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