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Aliases & Descriptionsfor TXNL1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions thioredoxin-like 11 2 thioredoxin-like protein 12 TRP321 2 3 thioredoxin-related protein 12 Txl1 2 TXL-12 32 kDa thioredoxin-related protein2 3 thioredoxin-related 32 kDa protein2 TXNL2 3 TXL3 thioredoxin-like, 32kDa1
Export aliases for TXNL1 gene to outside databases Previous GC identifers: GC18M052420 GC18M052421 GC18M054264
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Summariesfor TXNL1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Gene Wiki entry for TXNL1
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Genomic Viewsfor TXNL1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TXNL1 gene promoter: AP-1 GCNF-1 GCNF-2 COUP-TF1 HNF-4alpha2 RFX1 TGIF deltaCREB CREB ATF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for TXNL1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for TXNL1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 18q21.31 Ensembl cytogenetic band: 18q21.31 HGNC cytogenetic band: 18q21.31 TXNL1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 18 GeneLoc Exon Structure
GeneLoc location for GC18M050981: view genomic region
(about GC identifiers )
Start:
50,981,411 bp from pter
End:
51,017,287 bp from pter
Size:
35,877 bases
Orientation:
minus strand
1 alternative location : Chr 18- 54,264,439-54,305,920
RefSeq DNA sequence: NC_000018.9 NT_025028.14
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Proteinsfor TXNL1 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: TXNL1_HUMAN, O43396 (See
protein sequence )Recommended Name: Thioredoxin-like protein 1 Size : 289 amino acids; 32251 Da
Subcellular location : Cytoplasm
PDB structure from and Proteopedia : 1GH2 (3D)
 1WWY (3D)
 Explore the universe of human proteins at neXtProt for TXNL1: NX_O43396 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_004777.1 ENSEMBL proteins: ENSP00000217515 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
About this table
TXNL1 for ontologies About GeneDecksing Antibodies for TXNL1: Assays for TXNL1:
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Protein
Domains/ Familiesfor TXNL1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TXNL1 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry O43396 ProtoNet protein and cluster: O43396
1 Blocks protein family : IPB006662 Thioredoxin type domain UniProtKB/Swiss-Prot: TXNL1_HUMAN, O43396 Similarity : Contains 1 thioredoxin domain
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Gene Functionfor TXNL1 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section 3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0009055 electron carrier activity
IEA -- GO:0015035 protein disulfide oxidoreductase activity
IEA -- GO:0015036 disulfide oxidoreductase activity
IDA 9668102
About this table
TXNL1 for ontologies About GeneDecksing
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Pathways & Interactionsfor TXNL1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for TXNL1 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TXNL1 4 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
TXNL1 for ontologies About GeneDecksing
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Drugs & Compoundsfor TXNL1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
TXNL1 for compounds About GeneDecksing Browse Tocris compounds for TXNL1 1 Novoseek chemical compound relationship for TXNL1 gene
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
glucose
15.6
1
16438969 (1)
About this table
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Transcriptsfor TXNL1 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for TXNL1 gene: NM_004786.2
Additional cDNA sequence: AB209263.1 AF003938.1 AF051896.1 AF052659.1 AK094926.1 AK313653.1 BC001156.1 BX640857.1 CR615108.1
13 DOTS entries : DT.453897 DT.92407349 DT.91850846 DT.451926 DT.95188792 DT.75157992 DT.100644040 DT.91858889
DT.100815998 DT.40221703 DT.92440791 DT.95188791 DT.92326962 24/320 AceView cDNA sequences (see all 320 ):
BM551063 AV728382 AA743739 C00325 AA583443 BX111174 BE887614 W72866 AI339963 BM928276 AW474814 AF052659 CB128664 CD368419 BQ231905 AF051896 AI590701 BF438586 CD365235 BQ229551 CB240660 BQ441126 AA600928 AA845477
highest scoring ESTs for TXNL1 :AF003938 AA187791 AA196641 AA233945 AA255638 AA285186 AA314445 AA350950 AA370369 AA374382 Unigene Cluster for TXNL1:
Thioredoxin-like 1 Hs.114412 [show with all ESTs ] Unigene Representative Sequence: BX640857 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for TXNL1 (see all 6 ) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 SP1 :                     -               -     SP2 :                     -                   SP3 :                                       SP4 :                                       SP5 :       -                                
About this scheme ECgene alternative splicing isoforms for TXNL1 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000217515 (uc010xdz.1 uc002lgg.2 uc002lgh.2 uc002lgi.2 uc002lgj.1 )
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Expression for TXNL1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section TXNL1 expression in normal and diseased human tissues 1 / 2 / 3
7 probe-sets matching TXNL1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
32214_at2 , 3
U95-A
1
0.56
1.00
0.59
1.09
AF003938
1.00
1.00
1.00
1
85723_at2
U95-E
1
0.50
1.00
0.97
0.95
--
--
--
--
--
79933_at2
U95-E
1
0.44
1.00
0.94
0.98
--
--
--
--
--
201588_at2 , 3
U133-A
1
0.55
1.00
--
--
NM_004786
0.60
1.00
0.82
1
235561_at2
U133-B
1
0.27
1.00
--
--
--
--
--
--
--
201588_at2
U133Plus2
1
0.55
1.00
--
--
--
--
--
--
--
235561_at2
U133Plus2
1
0.27
1.00
--
--
--
--
--
--
--
About this table
TXNL1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAATTGTAAA SOURCE GeneReport for Unigene cluster: Hs.114412 Expression variation in blood from EXPOLDB for TXNL1
UniProtKB/Swiss-Prot: TXNL1_HUMAN, O43396 Tissue specificity : Ubiquitous
SABiosciences Custom PCR Arrays for TXNL1
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Orthologsfor TXNL1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for TXNL1 gene from 5/18 species (see all 18 )
About this table Species with no ortholog for TXNL1 ENSEMBL Gene Tree for TXNL1 (if available)
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Paralogsfor TXNL1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for TXNL1 gene TXNDC8 2 TXN 2 TXNDC2 2
TXNL1 for paralogs About GeneDecksing
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Genomic Variantsfor TXNL1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 18 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for TXNL1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TXNL1: --
QIAGEN SeqTarget long-range PCR primers for resequencing TXNL1
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Disorders & Mutationsfor TXNL1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TXNL1 for disorders About GeneDecksing
OMIM: 603049 Human Genome Epidemiology (HuGE) Navigator: TXNL1 (1 document)Export disorders and mutations for TXNL1 gene to outside databases
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Medical Newsfor TXNL1 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor TXNL1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/21 PubMed articles for TXNL1 gene, integrated from 7 sources (see all 21 ): (articles sorted by number of sources associating them with TXNL1) Purification, molecular cloning, and characterization of TRP32, a novel thioredoxin-related mammalian protein of 32 kDa. (PubMed id 9668102) 1 , 2 , 3, 7 Lee K.-K.... Yonehara S. (1998) Molecular cloning and expression of a cDNA encoding a human thioredoxin-like protein. (PubMed id 9473519) 1 , 2 , 3, 7 Miranda-Vizuete A.... Spyrou G. (1998) Genomic structure and chromosomal localization of human thioredoxin- like protein gene (txl). (PubMed id 10826702) 1 , 2 , 7 Miranda-Vizuete A. and Spyrou G. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801) 1 , 2 Gevaert K.... Vandekerckhove J. (2003) Crystal structure of the catalytic domain of a human thioredoxin-like protein. (PubMed id 11985582) 1 , 2 Jin J.... Yuan J. (2002) Thioredoxin Txnl1/TRP32 Is a Redox-active Cofactor of the 26 S Proteasome. (PubMed id 19349277) 1 , 7 Andersen K.M....Hartmann-Petersen R. (2009) Characterization of human thioredoxin-like-1: potential involvement in the cellular response against glucose deprivation. (PubMed id 16438969) 1 , 7 Jimenez A....Miranda-Vizuete A. (2006) Solution structure of the C-terminal DUF1000 domain o f the human thioredoxin-like 1 protein. (PubMed id 20455272) 1 , 7 Goroncy A.K....Yokoyama S. (2010) Thioredoxin-related Protein 32 is an arsenite-regulat ed Thiol Reductase of the proteasome 19 S particle. (PubMed id 19349280) 1 Wiseman R.L....Ron D. (2009)
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External Searches for TXNL1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TXNL1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TXNL1 gene
(According to HUGE )
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Specialized Databases showing TXNL1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for TXNL1 gene: Search GeneIP for patents involving TXNL1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TXNL1 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for TXNL1
ELISAs and CLIAs for TXNL1
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