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Aliases & Descriptionsfor UGT1A4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions UDP glucuronosyltransferase 1 family, polypeptide A41 2 UGT-1D2 3 UGT1D1 2 3 5 OTTHUMP000000651992 UDP glycosyltransferase 1 family, polypeptide A41 2 UDPGT2 HUG-BR21 2 OTTHUMP000001994482 Bilirubin-specific UDPGT isozyme 22 3 UDP-glucuronosyltransferase 1-42 UGT1-042 3 bilirubin UDP-glucuronosyltransferase isozyme 22 UDP-glucuronosyltransferase 1-D2 3 GNT13 UDP-glucuronosyltransferase 1A42 3 EC 2.4.1.173 UDPGT 1-42 3 UGT13 UGT1*42 3 hUG-BR23 UGT1.42 3
Export aliases for UGT1A4 gene to outside databases Previous GC identifers: GC02U990252 GC02P234817 GC02P234880 GC02P234365 GC02P234409 GC02P234195 GC02P234205 GC02P234215 GC02P234292 GC02P234627
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Summariesfor UGT1A4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for UGT1A4 : This gene encodes a UDP-glucuronosyltransferase, an enzyme of the glucuronidation pathway that transforms small lipophilic molecules, such as steroids, bilirubin, hormones, and drugs, into water-soluble, excretable metabolites. This gene is part of a complex locus that encodes several UDP-glucuronosyltransferases. The locus includes thirteen unique alternate first exons followed by four common exons. Four of the alternate first exons are considered pseudogenes. Each of the remaining nine 5' exons may be spliced to the four common exons, resulting in nine proteins with different N-termini and identical C-termini. Each first exon encodes the substrate binding site, and is regulated by its own promoter. This enzyme has some glucuronidase activity towards bilirubin, although is is more active on amines, steroids, and sapogenins. (provided by RefSeq) UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 Function : UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobioticsand endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate Gene Wiki entry for UGT1A4
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Genomic Viewsfor UGT1A4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the UGT1A4 gene promoter: HNF-4alpha2 COUP-TF1 Sp1 HNF-1A FOXO4 Pax-2 GR-beta GR-alpha SRF AP-2rep Other transcription factors Search SABiosciences Chromatin IP Primers for UGT1A4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q37 Ensembl cytogenetic band: 2q37.1 HGNC cytogenetic band: 2q37 UGT1A4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P226427: view genomic region
(about GC identifiers )
Start:
226,427,432 bp from pter
End:
226,481,779 bp from pter
Size:
54,348 bases
Orientation:
plus strand
1 alternative location : Chr 2+ 234,627,424-234,681,945
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Proteinsfor UGT1A4 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 (See
protein sequence )Recommended Name: UDP-glucuronosyltransferase 1-4 precursor Size : 534 amino acids; 60025 Da
Subcellular location : Microsome. Endoplasmic reticulum membrane; Single-pass membrane protein (Potential)
Secondary accessions : B2R937Alternative splicing : 1 isoform : P22310-1 (A number of isoforms are produced. The different isozymes have a different N-terminal domain and a common C-terminal domain of 245 residues)Explore the universe of human proteins at neXtProt for UGT1A4: NX_P22310 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_009051.1 ENSEMBL proteins: ENSP00000408608 ENSP00000362508 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
UGT1A4 for ontologies About GeneDecksing Antibodies for UGT1A4: Assays for UGT1A4:
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Protein
Domains/ Familiesfor UGT1A4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
UGT1A4 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry P22310 ProtoNet protein and cluster: P22310
1 Blocks protein family : IPB002213 UDP-glucoronosyl/UDP-glucosyl transferase UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 Similarity : Belongs to the UDP-glycosyltransferase family
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Gene Functionfor UGT1A4 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 Function : UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobioticsand endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate Catalytic activity : UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronosideInduction : By phenobarbitalEnzyme Number (IUBMB): EC 2.4.1.17
5/6 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 6 ):
GO ID Qualified GO term Evidence PubMed IDs GO:0001972 NOT retinoic acid binding
IDA -- GO:0015020 glucuronosyltransferase activity
TAS -- GO:0016758 transferase activity, transferring hexosyl groups
-- -- GO:0019899 enzyme binding
IDA -- GO:0042803 protein homodimerization activity
IPI --
About this table
UGT1A4 for ontologies About GeneDecksing
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Pathways & Interactionsfor UGT1A4 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
UGT1A4 for pathways About GeneDecksing 1 Millipore Pathway for UGT1A4 5/6 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for UGT1A4 (see all 6 )5/10 Kegg Pathways (Kegg details for UGT1A4) (see all 10 ): SABiosciences Pathway-Focused PCR Arrays including UGT1A4 : PAHS-003A PAHS-069A Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for UGT1A4 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for UGT1A4 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006805 xenobiotic metabolic process
TAS -- GO:0008152 metabolic process
IEA --
About this table
UGT1A4 for ontologies About GeneDecksing
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Drugs & Compoundsfor UGT1A4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
UGT1A4 for compounds About GeneDecksing Browse Tocris compounds for UGT1A4 10/27 Novoseek chemical compound relationships for UGT1A4 gene (see all 27 )
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
n-hydroxy-n'-acetylbenzidine
88.9
1
10506112 (1)
n-acetylbenzidine
82.5
1
10506112 (1)
uridine diphosphate
81.9
3
17430308 (1), 18161889 (1), 9733664 (1)
glucuronide
81.2
4
17359941 (1), 11560872 (1), 11408353 (1)
n-hydroxy phip
75.5
3
11375903 (1), 11408353 (1)
imipramine
71.3
19
16626519 (7), 12019188 (4), 12433823 (1), 12386132 (1) (see all 7 )
lamotrigine
69.8
5
17430308 (1), 19487247 (1), 17151188 (1), 19546240 (1)
2-naphthylamine
68.3
1
7628292 (1)
benzidine
65.2
2
12351142 (1), 7628292 (1)
trifluoperazine
64.2
6
19487247 (2), 12019188 (1), 12167564 (1), 17620344 (1)
About this table
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Transcriptsfor UGT1A4 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for UGT1A4 gene: NM_007120.2
24/271 AceView cDNA sequences (see all 271 ):
AY435138 NM_019093 NM_019078 NM_021027 AI701383 NM_205862 AI478649 AV650286 AY435139 NM_019075 BE464422 AU076863 CB163341 AY435140 AY435141 BC043491 AY435144 AV646429 AK025403 CB163625 AW297730 BG165230 AY435142 BI764371
highest scoring ESTs for UGT1A4 :AA088507 AA088506 BQ327579 T61402 T73284 GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000450233 (uc010zna.1 ) ENST00000373409 (uc002vux.2 )
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Expression for UGT1A4 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section UGT1A4 expression in normal and diseased human tissues 1 / 2 / 3
10 probe-sets matching UGT1A4 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
215125_s_at2 , 3
U133-A
9
1.00
0.14
--
--
AV691323
0.20
0.06
0.15
2
208596_s_at2 , 3
U133-A
9
1.00
0.13
--
--
NM_019093
0.20
0.04
0.14
2
207126_x_at2 , 3
U133-A
9
0.82
0.14
--
--
NM_000463
0.20
0.04
0.14
2
204532_x_at2 , 3
U133-A
9
0.82
0.14
--
--
NM_021027
0.20
0.04
0.14
2
206094_x_at2 , 3
U133-A
9
0.82
0.13
--
--
NM_001072
0.20
0.04
0.14
2
215125_s_at2
U133Plus2
9
1.00
0.14
--
--
--
--
--
--
--
208596_s_at2
U133Plus2
9
1.00
0.13
--
--
--
--
--
--
--
207126_x_at2
U133Plus2
9
0.82
0.14
--
--
--
--
--
--
--
204532_x_at2
U133Plus2
9
0.82
0.14
--
--
--
--
--
--
--
206094_x_at2
U133Plus2
9
0.82
0.13
--
--
--
--
--
--
--
About this table Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 Tissue specificity : Expressed in liver. Not expressed in skin or kidney
SABiosciences Expression via Pathway-Focused PCR Arrays including UGT1A4 : PAHS-003A PAHS-069A
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Orthologsfor UGT1A4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for UGT1A4 gene from 4 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
rat (Rattus norvegicus)
Ugt1a51
--
UDP glucuronosyltransferase 1 family, polypeptide A5
80.31(n) 76.98(a)
574523 NM_001039549.1 NP_001034638.1
mouse (Mus musculus)
Ugt1a51
--
UDP glucuronosyltransferase 1 family, polypeptide A5
78.28(n) 76.52(a)
394433 NM_201643.1 NP_964005.1
fruit fly (Drosophila melanogaster)
Ugt36Ba3
36B1
glucuronosyltransferase
30(a) (best of 8)
--
worm (Caenorhabditis elegans)
C10H11.53
I(4724067-4726765)
--
29(a) (best of 18)
--
About this table Species with no ortholog for UGT1A4 ENSEMBL Gene Tree for UGT1A4 (if available)
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Paralogsfor UGT1A4 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for UGT1A4 gene UGT1A5 2 UGT2A2 2 UGT1A8 2 UGT2B10 2 UGT1A10 2 UGT1A6 2 UGT2B15 2 UGT1A7 2 UGT2B4 2 UGT2B7 2 UGT2B11 2 UGT2B17 2 UGT2A3 2 UGT1A3 2 UGT1A1 2 UGT2B28 2 UGT1A9 2
UGT1A4 for paralogs About GeneDecksing
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Genomic Variantsfor UGT1A4 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 10 variations for UGT1A4 10 CNVs : 90342 90341 61892 35795 50416 39282 37520 39281 63332 90340 QIAGEN SeqTarget long-range PCR primers for resequencing UGT1A4
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Disorders & Mutationsfor UGT1A4 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
UGT1A4 for disorders About GeneDecksing
OMIM: 606429 UniProtKB/Swiss-Prot: UD14_HUMAN, P22310
Defects in UGT1A4 are the cause of Gilbert syndrome [MIM:143500]. Gilbert syndrome occurs as a consequence of reduced bilirubin transferase activity and is often detected in young adults with vague nonspecific complaints Defects in UGT1A4 are the cause of Crigler-Najjar syndrome type 1 (CN1) [MIM:218800]. CN1 patients have severe hyperbilirubinemia and usually die of kernicterus (bilirubin accumulation in the basal ganglia and brainstem nuclei) within the first year of life. CN1 inheritance is autosomal recessive Defects in UGT1A4 are the cause of Crigler-Najjar syndrome type 2 (CN2) [MIM:606785]. CN2 patients have less severe hyperbilirubinemia and usually survive into adulthood without neurologic damage. Phenobarbital, which induces the partially deficient glucuronyl transferase, can diminish the jaundice. CN2 inheritance is autosomal dominant
2 Novoseek disease relationships for UGT1A4 gene
About this table Human Gene Mutation Database (HGMD) : UGT1A4 Genetic Association Database (GAD): UGT1A4 Human Genome Epidemiology (HuGE) Navigator: UGT1A4 (21 documents) Export disorders and mutations for UGT1A4 gene to outside databases
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Medical Newsfor UGT1A4 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor UGT1A4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/103 PubMed articles for UGT1A4 gene, integrated from 7 sources (see all 103 ): (articles sorted by number of sources associating them with UGT1A4) A novel complex locus UGT1 encodes human bilirubin, phenol, and other UDP-glucuronosyltransferase isozymes with identical carboxyl termini. (PubMed id 1339448) 1 , 2 , 3 Ritter J.K....Owens I.S. (1992) UDP-glucuronosyltransferase 1A4 polymorphisms in a Japanese population and kinetics of clozapine glucuronidation. (PubMed id 15708967) 1 , 4, 7 Mori A....Takeuchi Y. (2005) Identification of defect in the genes for bilirubin UDP-glucuronosyl- transferase in a patient with Crigler-Najjar syndrome type II. (PubMed id 8280139) 1 , 2 , 7 Aono S.... Koiwai O. (1993) Cloning of two human liver bilirubin UDP-glucuronosyltransferase cDNAs with expression in COS-1 cells. (PubMed id 1898728) 1 , 2 , 7 Ritter J.K.... Owens I.S. (1991) Variation of hepatic glucuronidation: Novel functional polymorphisms of the UDP-glucuronosyltransferase UGT1A4. (PubMed id 15057901) 1 , 4, 7 Ehmer U....Strassburg C.P. (2004) Analysis of inherited genetic variations at the UGT1 locus in the French-Canadian population. (PubMed id 19204906) 1 , 2 , 7 MAcnard V....Guillemette C. (2009) Urinary excretion of phenytoin metabolites, 5-(4'-hydroxyphenyl)-5-phenylhydantoin and its O-glucuronide in humans and analysis of genetic polymorphisms of UDP-glucuronosyltransferases. (PubMed id 15855726) 1 , 4, 7 Yamanaka H....Yokoi T. (2005) Genetic variations and haplotypes of UGT1A4 in a Japanese population. (PubMed id 15855727) 1 , 4 Saeki M....Sawada J. (2005) Correlation between UDP-glucuronosyltransferase genotypes and 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone glucuronidation phenotype in human liver microsomes. (PubMed id 14871856) 1 , 4 Wiener D....Lazarus P. (2004) Thirteen UDPglucuronosyltransferase genes are encoded at the human UGT1 gene complex locus. (PubMed id 11434514) 1 , 2 Gong Q.H....Popescu N.C. (2001)
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External Searches for UGT1A4 gene
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Other Databases showing UGT1A4 gene
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Specialized Databases showing UGT1A4 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for UGT1A4 gene: Search GeneIP for patents involving UGT1A4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor UGT1A4 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
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