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USP8 Gene

protein-coding   GIFtS: 63

GC15P027548
ubiquitin specific peptidase 8
(Previous name: ubiquitin specific protease 8 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
ubiquitin specific peptidase 81 2     Ubiquitin isopeptidase Y2 3
KIAA00551 2 3     hUBPy2 3
UBPY1 2 3     ubiquitin carboxyl-terminal hydrolase 82
ubiquitin specific protease 81 2     FLJ344562
HumORF81 2     ubiquitin thioesterase 82
Ubiquitin thiolesterase 82 3     MGC1297182
Deubiquitinating enzyme 82 3     EC 3.4.19.123
Ubiquitin-specific-processing protease 82 3     

External Ids:    HGNC: 126311   Entrez Gene: 91012   Ensembl: ENSG000001385927   UniProtKB: P408183   

Export aliases for USP8 gene to outside databases

Previous GC identifers: GC15P046273 GC15P043762 GC15P048295 GC15P048432 GC15P048503 GC15P050716


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: UBP8_HUMAN, P40818
Function: Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role
at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin
chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase
in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex
containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin
dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of
protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates
EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation
and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex
and microtubules

Gene Wiki entry for USP8

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the USP8 gene promoter:
         CUTL1   Pax-2   Pax-6   POU2F1   Cart-1   p53   GATA-1   ER-alpha   XBP-1   ATF   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for USP8

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for USP8 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q21.2   Ensembl cytogenetic band:  15q21.2   HGNC cytogenetic band: 15q21.1

USP8 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
USP8 gene location

GeneLoc gene densities for chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15P027548:  view genomic region     (about GC identifiers)

Start:
27,547,372 bp from pter
End:
27,623,683 bp from pter
Size:
76,312 bases
Orientation:
plus strand

1 alternative location:
Chr15+ 50,716,579-50,793,280     
RefSeq DNA sequence:
NC_000015.9  NT_010194.17  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: UBP8_HUMAN, P40818 (See protein sequence)
Recommended Name: Ubiquitin carboxyl-terminal hydrolase 8  
Size: 1118 amino acids; 127523 Da
Subunit: Forms a ternary complex with RNF128 and OTUB1. Interacts (via C-terminal UCH catalytic domain) with OTUB1
isoform 1. Interacts with STAM2 (via SH3 domain). Interacts with DNAJB3, EGFR, EPS15, RASGRF1, RNF41, YWHAE, YWHAG and
YWHAZ (By similarity). Interacts with NBR1, RASGRF1, RNF41 and IST1. Associates with the ESCRT-0 complex and with
microtubules (By similarity)
Subcellular location: Cytoplasm. Nucleus (By similarity). Endosome membrane; Peripheral membrane protein. Cell
membrane; Peripheral membrane protein
Sequence caution: Sequence=AAH38801.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A
sequence; Sequence=AAH51345.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
PDB structures from and Proteopedia :
1WHB (3D)    2A9U (3D)    2GFO (3D)    2GWF (3D)    3N3K (3D)    
Secondary accessions: Q2TB31 Q7Z3U2 Q86VA0 Q8IWI7

Explore the universe of human proteins at neXtProt for USP8: NX_P40818 

Post-translational modifications:

  • Phosphorylation of Ser-718 is essential for interaction with YWHAE and for cytosol localization (By similarity).
  • Undergoes dephosphorylation at Ser-718 in the M phase (By similarity). Tyrosine-phosphorylated in its N-terminal half
    in an EGFR-dependent manner (By similarity)1
  • Ubiquitinated. Inactive form is mostly monoubiquitinated, but polyubiquitination happens too. Ubiquitination is
  • increased in EGF-stimulated cells. Ubiquitination of active form is undetectable, suggesting a possibility that USP8
    deubiquitinates itself, thereby regulating its own function (By similarity)1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (3 alternative transcripts): 
    NP_001122082.1  NP_001122083.1  NP_005145.3  


    ENSEMBL proteins: 
    ENSP00000379721 ENSP00000408491 ENSP00000302239 ENSP00000379717 ENSP00000405537 ENSP00000412682 


    Human Recombinant Proteins 
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: USP8
    OriGene Protein Over-expression Lysate: USP8
    GenScript Custom Purified and Recombinant Proteins Services for USP8 
    Novus Biologicals Lysate for USP8
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins

    5/8 Gene Ontology (GO) cellular component terms (GO ID links to tree view) (see all 8):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular IEA--
    GO:0005634 nucleus IEA--
    GO:0005737 cytoplasm IEA--
    GO:0005769 early endosome IDA16520378
    GO:0005829 cytosol IDA16520378
    About this table

    USP8 for ontologies           About GeneDecksing



    Antibodies for USP8: 
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for USP8
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    GenScript Custom Superior Antibodies Services for USP8 
    Browse antibodies at Epitomics

    Assays for USP8: 
    Browse Kits and Assays available from Millipore
    Browse ELISAs at Sigma-Aldrich
    OriGene Custom Immunoassay Development 
    Browse OriGene Fluorogenic Cell Assay Kits 
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for USP8 
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for USP8 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    USP8 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR001763 Rhodanese-like
     IPR001394 Peptidase_C19
     IPR015063 DUF1873
     IPR018200 Pept_C19ubi-hydrolase_C_CS

    Graphical View of Domain Structure for InterPro Entry P40818

    ProtoNet protein and cluster: P40818

    3 Blocks protein families:
    IPB001394 Ubiquitin thiolesterase
    IPB001448 Small acid-soluble spore protein
    IPB001763 Rhodanese-like


    UniProtKB/Swiss-Prot: UBP8_HUMAN, P40818
    Domain: The MIT domain is required for endosomal localization, CHMP1B-binding, maintenance of ESCRT-0 stability and
    EGFR degradation
    Domain: The rhodanese domain is sufficent for RNF41-binding (By similarity)
    Similarity: Belongs to the peptidase C19 family
    Similarity: Contains 1 MIT domain
    Similarity: Contains 1 rhodanese domain


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    UniProtKB/Swiss-Prot: UBP8_HUMAN, P40818
    Function: Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role
    at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin
    chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase
    in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex
    containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin
    dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of
    protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates
    EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation
    and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex
    and microtubules
    Catalytic activity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the
    C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal)
    Induction: Upon growth stimulation in starved human fibroblasts. Decreases in response to growth arrest induced by
    cell-cell contact
    Enzyme Number (IUBMB): EC 3.4.19.12 

    Inhib.
    RNA:
        
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA Panels and esiRNA and siRNA for USP8
    Sigma-Aldrich shRNA Panels and shRNA for USP8
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 4): USP8
    OriGene shRNA RFP (see all 4): USP8
    OriGene basic RS shRNA (see all 4): USP8
    OriGene siRNA (see all 3): USP8
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of USP8 
    miRNA:Sigma-Aldrich microRNA Mimics for USP8
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of USP8 
    1 SABiosciences Assays for microRNA that regulate USP8:
    hsa-miR-519b-5p

    Gene
    Editing:
    Browse CompoZr Knockout ZFN at Sigma-Aldrich 

    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    Browse iPSC Reprogramming Factors at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: USP8
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): USP8
    OriGene untagged cDNA clones in CMV expression vector (see all 4): USP8
    OriGene 3'-UTR clone (see all 3): USP8 
    Browse MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for USP8 
    Browse Sino Biological Human cDNA Clones

    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for USP8 

    Genatlas biochemistry entry for USP8:
    ubiquitin specific protease 8,similar to the tre oncogene,with homology to ubiquitin carboxy-terminal
    hydrolase,deubiquitin enzyme family

    5/7 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 7):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003690 double-stranded DNA binding ----
    GO:0004197 cysteine-type endopeptidase activity TAS9827704
    GO:0004221 ubiquitin thiolesterase activity IEA--
    GO:0004843 ubiquitin-specific protease activity IDA16520378
    GO:0005515 protein binding IPI17353931
    About this table

    USP8 for ontologies           About GeneDecksing

    Animal Models: 7 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Usp8):

    cardiovascular systemembryogenesisgrowth/sizehomeostasis/metabolismlethality-prenatal/perinatal
    life span-post-weaning/agingliver/biliary system

    USP8 for phenotypes           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section


    USP8 for pathways           About GeneDecksing

    1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for  USP8
        Protein Ubiquitination Pathway

    1 Kegg Pathway  (Kegg details for USP8):
        hsa04144 Endocytosis

        SABiosciences Custom Pathway-Focused PCR Arrays for USP8 

        Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for USP8
        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for USP8

    5/20 Interacting proteins for USP8 (P408181, 2 ENSP000003022393) via UniProtKB, MINT, and/or STRING (see all 20)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    YWHAZP631041, 2EBI-1050865,EBI-347088 MINT-3318133 MINT-51011
    CHMP1AQ9HD421, 2EBI-1050865,EBI-1057156 MINT-6946783
    CHMP1BQ7LBR11, 2EBI-1050865,EBI-2118090 MINT-6946799
    CHMP4CQ96CF21, 2EBI-1050865,EBI-1221015 MINT-6946888
    YWHABP319461, 2EBI-1050865,EBI-359815 MINT-50951
    About this table

    5/8 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 8):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006265 DNA topological change ----
    GO:0006511 ubiquitin-dependent protein catabolic process IEA--
    GO:0007032 endosome organization IMP16520378
    GO:0007049 cell cycle IEA--
    GO:0007265 Ras protein signal transduction IEA--
    About this table

    USP8 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    USP8 for compounds           About GeneDecksing

    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for USP8
    1 Novoseek chemical compound relationship for USP8 gene
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tyrosine 26.7 1 14646586 (1)
    About this table



    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA Panels and esiRNA and siRNA for USP8
    Sigma-Aldrich shRNA Panels and shRNA for USP8
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 4): USP8
    OriGene shRNA RFP (see all 4): USP8
    OriGene basic RS shRNA (see all 4): USP8
    OriGene siRNA (see all 3): USP8
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of USP8 
    miRNA: Sigma-Aldrich microRNA Mimics for USP8
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of USP8 
    1 SABiosciences Assays for microRNA that regulate USP8:
    hsa-miR-519b-5p
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: USP8
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): USP8
    OriGene untagged cDNA clones in CMV expression vector (see all 4): USP8
    OriGene 3'-UTR Clone (see all 3): USP8 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for USP8 
    Primers: OriGene genome-wide validated SYBR primer pairs: USP8
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for USP8: PPH12860A

    REFSEQ mRNAs for USP8 gene (3 alternative transcripts): 

    NM_001128610.1  NM_001128611.1  NM_005154.3  

    Additional cDNA sequence: 

    AK090830.1 AK292400.1 AK296480.1 AK300590.1 BC015545.1 BC026954.1 BC038801.1 BC051345.1 
    BC062694.1 BC092443.1 BC110590.2 BX537420.1 D29956.1 

    17 DOTS entries:

    DT.101983565  DT.117668  DT.444526  DT.121045161  DT.95276438  DT.95276444  DT.121045139  DT.102841822 
    DT.95290024  DT.92437210  DT.100795148  DT.121045147  DT.121045187  DT.121045207  DT.121310784  DT.95276440 
    DT.95276443 

    24/277 AceView cDNA sequences (see all 277):

    AA291439 BI256314 BQ232715 AA149437 AA453876 AI222503 BC051345 AI915940 
    AK091775 AI973154 BQ008106 AI812012 CN481560 AA446489 AA773709 AI479489 
    AI655860 AA235847 CB143520 BQ425745 AA773713 BP379003 BQ943006 BF435143 

    highest scoring ESTs for USP8:

    D29956 AA149437 AA250865 AA401886 AA421355 AA443908 AA444094 AA446309 AA446489 AA496689 

    Unigene Cluster for USP8:

    Ubiquitin specific peptidase 8
    Hs.443731  [show with all ESTs]
    Unigene Representative Sequence: NM_001128611


    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for USP8 (see all 9)

    ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18a · 18b ^ 19 ^ 20 ^
    SP1:                          -     -                                                                                                     -                     
    SP2:                                -                                                                                                     -                     
    SP3:                          -     -                       -                                                                                                   
    SP4:                                                                                                                                                            
    SP5:                                                        -     -     -     -     -                                                                           

    ExUns: 21a · 21b ^ 22a · 22b · 22c
    SP1:  -                           
    SP2:  -                           
    SP3:                              
    SP4:  -                           
    SP5:                              

    About this scheme

    ECgene alternative splicing isoforms for USP8
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000396444 ENST00000419830 ENST00000307179 ENST00000396440 ENST00000433963(uc001zyk.1 uc001zym.3 uc001zyl.3 uc001zyn.3 uc010ufh.1 uc010bev.1 uc001zyp.3)
    ENST00000425032

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    USP8 expression in normal and diseased human tissues

    1  / 2  / 3

    7 probe-sets matching USP8 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    43467_at2, 3 U95-B 1 1.00 1.00 0.61 0.91 N23022 0.40 1.00 0.76 1
    50904_g_at2 U95-C 1 1.00 1.00 0.87 0.92 -- -- -- -- --
    39794_at2, 3 U95-A 1 1.00 1.00 0.67 1.19 D29956 1.00 0.90 0.95 1
    229501_s_at2, 3 U133-B 1 1.00 1.00 -- -- AI393759 0.40 1.00 0.76 1
    202745_at2, 3 U133-A 1 0.91 1.00 -- -- NM_005154 0.60 1.00 0.82 1
    229501_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    202745_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
    About this table

    USP8 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    USP8 gene expression
    USP8 gene electronic northern expression
    USP8 gene sage expression
    About these images

    CGAP SAGE TAG: CATATAGCCT

    SOURCE GeneReport for Unigene cluster: Hs.443731

    Expression variation in blood from EXPOLDB for USP8

    Primers: OriGene genome-wide validated SYBR primer pairs: USP8
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for USP8: PPH12860A
        SABiosciences Custom PCR Arrays for USP8 


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for USP8 gene from 5/14 species (see all 14)
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    USP81   -- ubiquitin specific peptidase 8 92.68(n)
    91.76(a)
    478299  XM_535474.2  XP_535474.1 
    chimpanzee
    (Pan troglodytes)
    USP81   -- ubiquitin specific peptidase 8 99.67(n)
    99.28(a)
    453931  XM_001168860.1  XP_001168860.1 
    cow
    (Bos taurus)
    USP81   -- ubiquitin specific peptidase 8 91.98(n)
    91.06(a)
    538743  NM_001076126.1  NP_001069594.1 
    rat
    (Rattus norvegicus)
    Usp81   -- ubiquitin specific peptidase 8 84.09(n)
    84(a)
    296121  XM_215821.4  XP_215821.4 
    mouse
    (Mus musculus)
    Usp81 , 5 2 (61.76 cM)5
    ubiquitin specific peptidase 81, 5 84.51(n)1
    84.26(a)1
    840921  NM_019729.21  NP_062703.21 
     AB0457095  AF0571465  (see all 22)
    About this table        Species with no ortholog for USP8

    ENSEMBL Gene Tree for USP8 (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for USP8 gene
    LOC7283792  ENSG000002509132  USP17L6P2  USP422  LOC7283932  LOC7284052  LOC1002872052  USP17L32  
    LOC1002871442  USP22  LOC1002874412  LOC1002873642  USP17L82  USP17L22  LOC1002874782  LOC7284002  
    USP172  LOC1002875132  USP502  USP17L1P2  LOC1002885202  LOC7284192  LOC1002874042  USP17L72  
    USP17L42  LOC1002871782  LOC1002873272  USP362  USP212  LOC1002872382  LOC7283692  USP17L52  

    USP8 for paralogs           About GeneDecksing


    Pseudogenes
    1 related pseudogene



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    10/748 NCBI SNPs in USP8 are shown (see all 748)
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 15 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ----------
    rs9346361,2
    C,F,A,H,50724492(-) ACAAAG/CTGGGC 3 -- int18Minor allele frequency- C:0.08NS EA NA 496
    rs9346391,2
    H50766911(-) tatcgT/Gctatt 3 -- int14Minor allele frequency- G:0.00NS EA 414
    rs10565721,2
    --50773887(+) AAAAAC/AAAACA 6 /K /N mis1 ref11Minor allele frequency- A:0.00MN 184
    rs10565731,2
    --50773891(+) ACAAAA/CAAGAA 6 K Q mis1 ref10--------
    rs10565741,2
    --50773894(+) AACAAG/AAAAAA 6 /K /E mis1 ref11Minor allele frequency- A:0.00MN 184
    rs22417691,2
    C,F,O,A,H,50716633(-) TTAGCC/GTTGGC 3 -- ut5116Minor allele frequency- G:0.29EA NA MN NS WA 3580
    rs22891081,2
    C,F,O,A,50782335(-) AATGGC/TGATAA 3 -- int118Minor allele frequency- T:0.45EA NA NS WA 2448
    rs24140421,2
    H50749871(+) CCTGGC/T/TT  
            
    CACAT
    3 -- int14NS EA 420
    rs24140431,2
    C,F,50727470(-) atattT/Cccaat 3 -- int110Minor allele frequency- C:0.02NS EA NA WA 432
    rs24140441,2
    C50727091(-) acctgC/Taatcc 3 -- int11Minor allele frequency- T:0.50NA 2
    About this table

    HapMap Linkage Disequilibrium images for USP8 (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for USP8
         2 CNVs: 53349 29644
         1 Indel: 25526

    QIAGEN SeqTarget long-range PCR primers for resequencing USP8 

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    USP8 for disorders           About GeneDecksing

    OMIM: 603158


    Export disorders and mutations for USP8 gene to outside databases

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    10/44 PubMed articles for USP8 gene, integrated from 7 sources (see all 44):
    (articles sorted by number of sources associating them with USP8)
    1. Amino-terminal dimerization, NRDP1-rhodanese interaction, and inhibited catalytic domain conformation of the ubiquitin-specific protease 8 (USP8). (PubMed id 17035239)1, 2, 7 Avvakumov G.V.... Dhe-Paganon S. (2006)
    2. The MIT domain of UBPY constitutes a CHMP binding and endosomal localization signal required for efficient epidermal growth factor receptor degradation. (PubMed id 17711858)1, 2 Row P.E....Urbe S. (2007)
    3. The ubiquitin isopeptidase UBPY regulates endosomal ubiquitin dynamics and is essential for receptor down-regulation. (PubMed id 16520378)1, 2 Row P.E....Urbe S. (2006)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Human and mouse proteases: a comparative genomic approach. (PubMed id 12838346)1, 3 Puente X.S.... Lopez-Otin C. (2003)
    6. UBPY: a growth-regulated human ubiquitin isopeptidase. (PubMed id 9628861)1, 2 Naviglio S.... Draetta G.F. (1998)
    7. An oncogenic fusion product of the phosphatidylinositol 3-kinase p85beta subunit and HUMORF8, a putative deubiquitinating enzyme. (PubMed id 9582025)1, 3 Janssen J.W.G.... Schulz A.S. (1998)
    8. Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7584044)1, 2 Nomura N....Tabata S. (1994)
    9. 14-3-3-dependent inhibition of the deubiquitinating activity of UBPY and its cancellation in the M phase. (PubMed id 17720156)1, 7 Mizuno E....Komada M. (2007)
    10. Stabilization of the E3 ubiquitin ligase Nrdp1 by the deubiquitinating enzyme USP8. (PubMed id 15314180)1, 7 Wu X....Carraway K.L. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9101 HGNC: 12631 AceView: USP8 Ensembl:ENSG00000138592 euGenes: HUgn9101
    ECgene: USP8 Kegg: 9101 H-InvDB: USP8

    (According to HUGE)
    About This Section
    HUGE: KIAA0055

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    ATLAS Chromosomes in Cancer entry for USP8 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
    About This Section
    Patent Information for USP8 gene:
    Search GeneIP for patents involving USP8

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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     Regulatory tfbs in USP8 promoter
     Search Chromatin IP Primers for USP8
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     ELISAs and CLIAs for USP8
           

    GeneCards Homepage - Last full update: 31 Dec 2010 - Incremental updates: 10 Jan 2011 , 10 Jan 2011

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