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Aliases & Descriptionsfor UTP6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions UTP6, small subunit (SSU) processome component, homolog (yeast)1 2 chromosome 17 open reading frame 401 HCA661 2 3 U3 small nucleolar RNA-associated protein 6 homolog2 Hepatocellular carcinoma-associated antigen 662 3 hepatocellular carcinoma associated antigen 662 Multiple hat domains protein2 3 MHAT3 C17orf402 3
Export aliases for UTP6 gene to outside databases Previous GC identifers: GC17M027216 GC17M030187
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Summariesfor UTP6 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: UTP6_HUMAN, Q9NYH9 Function : Involved in nucleolar processing of pre-18S ribosomal RNA (By similarity)Gene Wiki entry for UTP6
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Genomic Viewsfor UTP6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the UTP6 gene promoter: NF-1 c-Myb Other transcription factors Search SABiosciences Chromatin IP Primers for UTP6 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17q11.2 Ensembl cytogenetic band: 17q11.2 HGNC cytogenetic band: 17q11.2 UTP6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M026401: view genomic region
(about GC identifiers )
Start:
26,400,510 bp from pter
End:
26,439,036 bp from pter
Size:
38,527 bases
Orientation:
minus strand
1 alternative location : Chr 17- 30,187,923-30,228,731
RefSeq DNA sequence: NC_000017.10 NT_010799.15
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Proteinsfor UTP6 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: UTP6_HUMAN, Q9NYH9 (See
protein sequence )Recommended Name: U3 small nucleolar RNA-associated protein 6 homolog Size : 597 amino acids; 70194 Da
Subcellular location : Nucleus, nucleolus
Secondary accessions : Q8IX96 Q96BL2 Q9NQ91Explore the universe of human proteins at neXtProt for UTP6: NX_Q9NYH9 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_060898.2 ENSEMBL proteins: ENSP00000261708 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
UTP6 for ontologies About GeneDecksing Antibodies for UTP6: Assays for UTP6:
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Protein
Domains/ Familiesfor UTP6 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
UTP6 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NYH9 ProtoNet protein and cluster: Q9NYH9
2 Blocks protein families : IPB003107 RNA-processing protein IPB013949 U3 small nucleolar RNA-associated protein 6 UniProtKB/Swiss-Prot: UTP6_HUMAN, Q9NYH9 Similarity : Belongs to the UTP6 familySimilarity : Contains 5 HAT repeats
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Gene Functionfor UTP6 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: UTP6_HUMAN, Q9NYH9 Function : Involved in nucleolar processing of pre-18S ribosomal RNA (By similarity)
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
IEA --
About this table
UTP6 for ontologies About GeneDecksing
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Pathways & Interactionsfor UTP6 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for UTP6 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for UTP6 3 Interacting proteins for UTP6 (Q9NYH9 2 ) via UniProtKB, MINT, and/or STRING About this table 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006364 rRNA processing
IEA -- GO:0006396 RNA processing
IEA --
About this table
UTP6 for ontologies About GeneDecksing
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Drugs & Compoundsfor UTP6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for UTP6
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Transcriptsfor UTP6 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for UTP6 gene: NM_018428.2
Additional cDNA sequence: AF116631.1 AF244135.1 AF334386.1 AJ272197.1 AK057202.1 AK126564.1 AK225448.1 AK299806.1 AK315929.1 BC015454.1 BC035325.1 CR607732.1 CR625726.1
13 DOTS entries : DT.207560 DT.101981307 DT.70103540 DT.91746371 DT.100824134 DT.100824141 DT.120953784 DT.97817416
DT.120953780 DT.91942184 DT.95140773 DT.99985401 DT.100841360 24/138 AceView cDNA sequences (see all 138 ):
BM905762 BM478186 BC035325 BC015454 AI949382 BE675092 AL535002 AW196869 AI784001 AK057202 BM829542 AA100219 AW613268 CD721821 BE876142 F24299 AI805121 BM550227 CR625726 NM_018428 CR607732 AI862739 AL565738 BQ938611
highest scoring ESTs for UTP6 :AF244135 AF334386 AI628547 AI949382 AK057202 AL535002 BC015454 BC035325 BE074944 BE095240 Unigene Cluster for UTP6:
UTP6, small subunit (SSU) processome component, homolog (yeast) Hs.589862 [show with all ESTs ] Unigene Representative Sequence: AK126564 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for UTP6 (see all 7 ) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b · 15c ^ 16a · 16b ^ 17 ^ 18 ^ SP1 :                 -       -                 -   -       -       SP2 :                                       -   -       -       SP3 :             -   -   -   -     -                               SP4 :                                                     SP5 :                                               -      
ExUns: 19a · 19b SP1 :     SP2 :     SP3 :     SP4 :     SP5 :    
About this scheme ECgene alternative splicing isoforms for UTP6 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000490218 ENST00000261708 (uc002hgr.2 uc010cst.2 uc010wbw.1 )ENST00000484661 ENST00000477128 (uc002hgq.2 ) ENST00000477860
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Expression for UTP6 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section UTP6 expression in normal and diseased human tissues 1 / 2 / 3
5 probe-sets matching UTP6 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
44861_at2 , 3
U95-B
1
1.00
1.00
0.88
1.27
AI949382
0.80
1.00
0.91
1
50166_at2 , 3
U95-B
1
1.00
1.00
0.92
1.24
AI628547
0.80
1.00
0.91
1
42285_at2
U95-B
1
0.38
1.00
0.76
0.50
--
--
--
--
--
218715_at2 , 3
U133-A
1
0.73
1.00
--
--
NM_018428
0.60
1.00
0.82
1
218715_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
About this table
UTP6 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTATGCATCA SOURCE GeneReport for Unigene cluster: Hs.589862 SABiosciences Custom PCR Arrays for UTP6
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Orthologsfor UTP6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for UTP6 gene from 5/14 species (see all 14 )
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
UTP61
--
UTP6, small subunit (SSU) processome component, homolog more
89.34(n) 89.61(a)
480616 XM_848784.1 XP_853877.1
chimpanzee (Pan troglodytes)
UTP61
--
UTP6, small subunit (SSU) processome component, homolog more
99.42(n) 99.23(a)
454568 XM_511397.2 XP_511397.2
cow (Bos taurus)
UTP61
--
UTP6, small subunit (SSU) processome component, homolog more
81.57(n) 74.87(a)
614984 XM_867469.2 XP_872562.1
rat (Rattus norvegicus)
Utp61
--
UTP6, small subunit (SSU) processome component, homolog more
83.16(n) 82.15(a)
360574 XM_340853.2 XP_340854.1
mouse (Mus musculus)
Utp61 , 5
11 (47.29 cM) 5
UTP6, small subunit (SSU) processome component, homolog more 1, 5
85.35(n) 1 86.24(a) 1
216987 1 NM_144826.3 1 NP_659075.1 1 AF334387 5 AI466034 5 (see all 18 )
About this table Species with no ortholog for UTP6 ENSEMBL Gene Tree for UTP6 (if available)
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Paralogsfor UTP6 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor UTP6 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 17 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for UTP6 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for UTP6 1 CNV : 4030
QIAGEN SeqTarget long-range PCR primers for resequencing UTP6
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Disorders & Mutationsfor UTP6 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section --
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Medical Newsfor UTP6 gene (Possibly Related Articles in
Doctor's Guide )
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Publicationsfor UTP6 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/14 PubMed articles for UTP6 gene, integrated from 7 sources (see all 14 ): (articles sorted by number of sources associating them with UTP6) A common set of at least 11 functional genes is lost in the majority of NF1 patients with gross deletions. (PubMed id 10843809) 1 , 2 , 3 Jenne D.E.... Thiel G. (2000) Evidence by expression analysis of candidate genes fo r congenital heart defects in the NF1 microdeletion interval. (PubMed id 16138909) 1 , 3 Venturin M....Riva P. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Functional proteomic analysis of human nucleolus. (PubMed id 12429849) 1 , 2 Scherl A.... Diaz J.-J. (2002) Large scale identification of human hepatocellular carcinoma- associated antigens by autoantibodies. (PubMed id 12097419) 1 , 2 Wang Y....Chen W.-F. (2002) Positive regulation of apoptosis by HCA66, a new Apaf-1 interacting protein, and its putative role in the physiopathology of NF1 microdeletion syndrome patients. (PubMed id 17380155) 1 , 7 Piddubnyak V....Poyet J.L. (2007) Stability of the small gamma-tubulin complex requires HCA66, a protein of the centrosome and the nucleolus. (PubMed id 19299467) 1 Fant X....Merdes A. (2009) Mutations in RNF135, a gene within the NF1 microdeletion region, cause phenotypic abnormalities including overgrowth. (PubMed id 17632510) 1 Douglas J.... Rahman N. (2007) Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514) 1 Rual J.F....Vidal M. (2005) Nucleolar proteome dynamics. (PubMed id 15635413) 1 Andersen J.S....Mann M. (2005)
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External Searches for UTP6 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing UTP6 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing UTP6 gene
(According to HUGE )
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Specialized Databases showing UTP6 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for UTP6 gene: Search GeneIP for patents involving UTP6 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor UTP6 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for UTP6
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