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Aliases & Descriptionsfor VIL1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions villin 11 2 D2S14711 2 VIL2 3 OTTHUMP000002071592 villin-12
Export aliases for VIL1 gene to outside databases Previous GC identifers: GC02P217304 GC02P218009 GC02P219247 GC02P219491 GC02P219113 GC02P218992 GC02P219285
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Summariesfor VIL1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for VIL1 : This gene encodes a member of a family of calcium-regulated actin-binding proteins. This protein represents a dominant part of the brush border cytoskeleton which functions in the capping, severing, and bundling of actin filaments. Two mRNAs of 2.7 kb and 3.5 kb have been observed; they result from utilization of alternate poly-adenylation signals present in the terminal exon. (provided by RefSeq) UniProtKB/Swiss-Prot: VILI_HUMAN, P09327 Function : Ca(2+)-regulated actin-binding protein
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Genomic Viewsfor VIL1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the VIL1 gene promoter: SRF MRF-2 Max1 c-Myc AhR LUN-1 GATA-2 GATA-1 GATA-3 ZID Other transcription factors Search SABiosciences Chromatin IP Primers for VIL1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q35 Ensembl cytogenetic band: 2q35 HGNC cytogenetic band: 2q35 VIL1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P211136: view genomic region
(about GC identifiers )
Start:
211,136,728 bp from pter
End:
211,167,137 bp from pter
Size:
30,410 bases
Orientation:
plus strand
1 alternative location : Chr 2+ 219,283,815-219,318,018
RefSeq DNA sequence: NC_000002.11 NT_005403.17
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Proteinsfor VIL1 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: VILI_HUMAN, P09327 (See
protein sequence )Recommended Name: Villin-1 Size : 827 amino acids; 92695 Da
Subunit : Monomer
Subcellular location : Cytoplasm, cytoskeleton
PDB structure from and Proteopedia : 1UNC (3D)
 3FG7 (3D)
 
Secondary accessions : B2R9A7Explore the universe of human proteins at neXtProt for VIL1: NX_P09327 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_009058.2 ENSEMBL proteins: ENSP00000412657 ENSP00000409270 ENSP00000375962 ENSP00000402688 ENSP00000248444 ENSP00000394030 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
VIL1 for ontologies About GeneDecksing Antibodies for VIL1: Assays for VIL1:
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Protein
Domains/ Familiesfor VIL1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
VIL1 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P09327 ProtoNet protein and cluster: P09327
3 Blocks protein families : IPB003128 Villin headpiece IPB007122 Gelsolin family signature IPB007123 Gelsolin region UniProtKB/Swiss-Prot: VILI_HUMAN, P09327 Domain : Consists of a large core fragment, the N-terminal portion, and a small headpiece, the C-terminal portion. Theheadpiece binds F-actin strongly in both the presence and absence of calcium Similarity : Belongs to the villin/gelsolin familySimilarity : Contains 6 gelsolin-like repeatsSimilarity : Contains 1 HP (headpiece) domain
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Gene Functionfor VIL1 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: VILI_HUMAN, P09327 Function : Ca(2+)-regulated actin-binding protein
Genatlas biochemistry entry for VIL1 :villin 1 (95kDa),component of intestinal brush border cytoskeleton,actin binding protein 2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
VIL1 for ontologies About GeneDecksing Animal Models: 2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Vil1) :
VIL1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor VIL1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for VIL1 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for VIL1 2 Interacting proteins for VIL1 (P09327 1 , 2 ) via UniProtKB, MINT, and/or STRING About this table 4 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
VIL1 for ontologies About GeneDecksing
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Drugs & Compoundsfor VIL1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for VIL1
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Transcriptsfor VIL1 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for VIL1 gene: NM_007127.2
Additional cDNA sequence: AK223398.1 AK300965.1 AK313709.1 BC017303.2 X04657.1 X12901.1
8 DOTS entries : DT.86839119 DT.416827 DT.95360700 DT.92429189 DT.95366402 DT.100788777 DT.40106351 DT.102823347
24/125 AceView cDNA sequences (see all 125 ):
AI910841 AA887782 AW139085 BC017303 BX483099 AA502293 AA128234 AI304462 AA305307 BQ084461 BM783461 AA876039 N74218 CB133386 BM852368 AW273255 AW444781 CA429743 BX505818 AV697342 BM823478 AI355117 AA527320 AI304550
highest scoring ESTs for VIL1 :X12901 AA527320 AI346370 AI355117 AI433336 AV697342 AW242356 AW269183 AW951431 BF063361 Unigene Cluster for VIL1:
Villin 1 Hs.654595 [show with all ESTs ] Unigene Representative Sequence: NM_007127 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for VIL1 ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18 ^ 19 ^ 20 SP1 :                         -       -                     SP2 :                                                   SP3 :       -   -   -   -                                       SP4 :                                                   SP5 :         -                                          
About this scheme ECgene alternative splicing isoforms for VIL1 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000454069 ENST00000440053 (uc002vic.1 ) ENST00000392114 ENST00000441734 ENST00000248444 (uc002via.2 uc010zke.1 uc002vib.2 ) ENST00000419986
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Expression for VIL1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section VIL1 expression in normal and diseased human tissues 1 / 2 / 3
8 probe-sets matching VIL1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
35415_at2 , 3
U95-A
1
0.88
1.00
0.93
0.97
X12901
1.00
1.00
1.00
1
61664_r_at2 , 3
U95-C
1
0.38
1.00
0.77
1.21
AI859398
0.40
1.00
0.76
1
205506_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_007127
0.60
1.00
0.82
1
228912_at2 , 3
U133-B
1
0.27
1.00
--
--
AI436136
0.20
0.50
0.38
1
205506_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
1554943_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
1554945_x_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
228912_at2
U133Plus2
1
0.27
1.00
--
--
--
--
--
--
--
About this table
VIL1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCAACGAGGA SOURCE GeneReport for Unigene cluster: Hs.654595 Expression variation in blood from EXPOLDB for VIL1
UniProtKB/Swiss-Prot: VILI_HUMAN, P09327 Tissue specificity : Major component of microvilli of intestinal epithelial cells and kidney proximal tubule cells
SABiosciences Custom PCR Arrays for VIL1
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Orthologsfor VIL1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for VIL1 gene from 5/12 species (see all 12 )
About this table Species with no ortholog for VIL1 ENSEMBL Gene Tree for VIL1 (if available)
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Paralogsfor VIL1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for VIL1 gene FLII 2 SVIL 2 VILL 2 AVIL 2 GSN 2 SCIN 2 CAPG 2
VIL1 for paralogs About GeneDecksing
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Genomic Variantsfor VIL1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 2 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for VIL1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for VIL1: --
QIAGEN SeqTarget long-range PCR primers for resequencing VIL1
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Disorders & Mutationsfor VIL1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
VIL1 for disorders About GeneDecksing
OMIM: 193040 Export disorders and mutations for VIL1 gene to outside databases
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Medical Newsfor VIL1 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor VIL1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/39 PubMed articles for VIL1 gene, integrated from 7 sources (see all 39 ): (articles sorted by number of sources associating them with VIL1) Sequence of human villin: a large duplicated domain homologous with other actin-severing proteins and a unique small carboxy-terminal domain related to villin specificity. (PubMed id 2846586) 1 , 2 , 3 Arpin M.... van de Kerckhove B. (1988) A human villin cDNA clone to investigate the differentiation of intestinal and kidney cells in vivo and in culture. (PubMed id 3453110) 1 , 2 Pringault E.... Louvard D. (1986) Villin1, a novel diagnostic marker for cervical adeno carcinoma. (PubMed id 19377296) 1 Nakamura E....Imai T. (2009) Cdx2 and the Brm-type SWI/SNF complex cooperatively regulate villin expression in gastrointestinal cells. (PubMed id 19371634) 1 Yamamichi N....Iba H. (2009) Autotaxin and lysophosphatidic acid stimulate intestinal cell motility by redistribution of the actin modifying protein villin to the developing lamellipodia. (PubMed id 18054784) 1 Khurana S....Mathew S. (2008) Regulation of cell structure and function by actin-binding proteins: villin's perspective. (PubMed id 18307996) 1 Khurana S. and George S.P. (2008) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 1 Barbe L....Andersson-Svahn H. (2008) Janus kinase 3 regulates interleukin 2-induced mucosal wound repair through tyrosine phosphorylation of villin. (PubMed id 17537734) 1 Kumar N....Waters C.M. (2007) Villin severing activity enhances actin-based motility in vivo. (PubMed id 17182858) 1 Revenu C....Robine S. (2007) Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931) 1 Ewing R.M.... Figeys D. (2007)
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External Searches for VIL1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing VIL1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing VIL1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing VIL1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for VIL1 gene: Search GeneIP for patents involving VIL1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor VIL1 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Antibodies & Assays for VIL1   (Villin-1)
Search Tocris compounds for VIL1
ELISAs and CLIAs for VIL1
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