WNT9B Gene
protein-coding GIFtS : 52
GC17P040307
wingless-type MMTV integration site family, member 9B (Previous names: wingless-type MMTV integration site family, member 15 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: WNT15 )
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Aliases & Descriptionsfor WNT9B gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions wingless-type MMTV integration site family, member 9B1 2 Protein Wnt-14b2 3 WNT14B1 2 3 protein Wnt-9b2 WNT152 3 5 Protein Wnt-153 wingless-type MMTV integration site family, member 151 2
Export aliases for WNT9B gene to outside databases Previous GC identifers: GC17P047327 GC17P045271 GC17P045403 GC17P042283 GC17P044910
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Summariesfor WNT9B gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for WNT9B : The WNT gene family consists of structurally related genes that encode secreted signaling proteins. These proteins have been implicated in oncogenesis and in several developmental processes, including regulation of cell fate and patterning during embryogenesis. This gene is a member of the WNT gene family. Study of its expression in the teratocarcinoma cell line NT2 suggests that it may be implicated in the early process of neuronal differentiation of NT2 cells induced by retinoic acid. This gene is clustered with WNT3, another family member, in the chromosome 17q21 region. (provided by RefSeq) UniProtKB/Swiss-Prot: WNT9B_HUMAN, O14905 Function : Ligand for members of the frizzled family of seven transmembrane receptors. Probable developmental protein.May be a signaling molecule which affects the development of discrete regions of tissues. Is likely to signal over only few cell diameters (By similarity)
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Genomic Viewsfor WNT9B gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the WNT9B gene promoter: HNF-4alpha2 p53 c-Myb SRF MIF-1 RFX1 GCNF-2 GCNF-1 FAC1 PPAR-gamma1 Other transcription factors Search SABiosciences Chromatin IP Primers for WNT9B Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for WNT9B
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17q21 Ensembl cytogenetic band: 17q21.32 HGNC cytogenetic band: 17q21 WNT9B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P040307: view genomic region
(about GC identifiers )
Start:
40,307,364 bp from pter
End:
40,332,821 bp from pter
Size:
25,458 bases
Orientation:
plus strand
1 alternative location : Chr 17+ 44,910,712-44,962,485
RefSeq DNA sequence: NC_000017.10 NT_010783.15
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Proteinsfor WNT9B gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: WNT9B_HUMAN, O14905 (See
protein sequence )Recommended Name: Protein Wnt-9b precursor Size : 357 amino acids; 39001 Da
Subunit : Component of the Wnt-Fzd-LRP5-LRP6 signaling complex that contains a WNT protein, a FZD protein and LRP5 orLRP6. Interacts directly in the complex with LRP6
Subcellular location : Secreted, extracellular space, extracellular matrix
Secondary accessions : Q6UXT4 Q96Q09Explore the universe of human proteins at neXtProt for WNT9B: NX_O14905
REFSEQ proteins: NP_003387.1 ENSEMBL proteins: ENSP00000377105 ENSP00000290015 ENSP00000366039 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
WNT9B for ontologies About GeneDecksing Antibodies for WNT9B: Assays for WNT9B:
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Protein
Domains/ Familiesfor WNT9B gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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WNT9B for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O14905 ProtoNet protein and cluster: O14905
1 Blocks protein family : IPB005816 Secreted growth factor Wnt protein UniProtKB/Swiss-Prot: WNT9B_HUMAN, O14905 Similarity : Belongs to the Wnt family
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Gene Functionfor WNT9B gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: WNT9B_HUMAN, O14905 Function : Ligand for members of the frizzled family of seven transmembrane receptors. Probable developmental protein.May be a signaling molecule which affects the development of discrete regions of tissues. Is likely to signal over only few cell diameters (By similarity)
3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001664 G-protein-coupled receptor binding
ISS -- GO:0004871 signal transducer activity
IEA -- GO:0005201 extracellular matrix structural constituent
NAS --
About this table
WNT9B for ontologies About GeneDecksing Animal Models: 7 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Wnt9b) :
WNT9B for phenotypes About GeneDecksing
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Pathways & Interactionsfor WNT9B gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
WNT9B for pathways About GeneDecksing 2 Millipore Pathways for WNT9B 5/11 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for WNT9B (see all 11 )5 Kegg Pathways (Kegg details for WNT9B) : SABiosciences Pathway-Focused PCR Array including WNT9B : PAHS-078A Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for WNT9B Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for WNT9B 5/35 Interacting proteins for WNT9B (ENSP00000290015 3 ) via UniProtKB, MINT, and/or STRING (see all 35 )About this table 5/37 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 37 ):
GO ID Qualified GO term Evidence PubMed IDs GO:0001658 branching involved in ureteric bud morphogenesis
ISS -- GO:0001701 in utero embryonic development
-- -- GO:0001822 kidney development
-- -- GO:0001932 regulation of protein phosphorylation
-- -- GO:0003339 regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis
ISS --
About this table
WNT9B for ontologies About GeneDecksing
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Drugs & Compoundsfor WNT9B gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
WNT9B for compounds About GeneDecksing Browse Tocris compounds for WNT9B 1 Novoseek chemical compound relationship for WNT9B gene
About this table
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Transcriptsfor WNT9B gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for WNT9B gene: NM_003396.1
Additional cDNA sequence: AB063483.1 AK127268.1 AK127615.1 AY358217.1 BC064534.1
5 DOTS entries : DT.95204679 DT.99983080 DT.404939 DT.101974831 DT.92014147
16 AceView cDNA sequences :
NM_003396 AB063483 AK127268 AA317825 BX503643 Z43167 BX107965 Z39248 AY358217 AW967102 AK127615 BM545100 R12603 AW023308 R09965 BF921697
highest scoring ESTs for WNT9B :Z39248 AB063483 AK127268 AK127615 AY358217 BX503643 Z43167 AW023308 BC064534 BM545100 Unigene Cluster for WNT9B:
Wingless-type MMTV integration site family, member 9B Hs.326420 [show with all ESTs ] Unigene Representative Sequence: AK127268 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000393461 (uc002ikx.1 ) ENST00000290015 (uc002ikw.1 ) ENST00000376843
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Expression for WNT9B gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section WNT9B expression in normal and diseased human tissues 1 / 2 / 3
1 probe-set matching WNT9B gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
1552973_at2
U133Plus2
1
0.64
1.00
--
--
--
--
--
--
--
About this table Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.326420 UniProtKB/Swiss-Prot: WNT9B_HUMAN, O14905 Tissue specificity : Moderately expressed in fetal kidney and adult kidney. Also found in brain
SABiosciences Expression via Pathway-Focused PCR Array including WNT9B : PAHS-078A
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Orthologsfor WNT9B gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for WNT9B gene from 5/7 species (see all 7 )
About this table Species with no ortholog for WNT9B ENSEMBL Gene Tree for WNT9B (if available)
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Paralogsfor WNT9B gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for WNT9B gene WNT10B 2 WNT16 2 WNT11 2 WNT10A 2 WNT9A 2
WNT9B for paralogs About GeneDecksing
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Genomic Variantsfor WNT9B gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 17 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for WNT9B (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for WNT9B 2 CNVs : 34570 4038
QIAGEN SeqTarget long-range PCR primers for resequencing WNT9B
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Disorders & Mutationsfor WNT9B gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
WNT9B for disorders About GeneDecksing
OMIM: 602864 4 Novoseek disease relationships for WNT9B gene
About this table Human Genome Epidemiology (HuGE) Navigator: WNT9B (5 documents) Export disorders and mutations for WNT9B gene to outside databases
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Medical Newsfor WNT9B gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor WNT9B gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/23 PubMed articles for WNT9B gene, integrated from 7 sources (see all 23 ): (articles sorted by number of sources associating them with WNT9B) Isolation of two novel WNT genes, WNT14 and WNT15, one of which (WNT15) is closely linked to WNT3 on human chromosome 17q21. (PubMed id 9441749) 1 , 2 , 3 Bergstein I.... Brown A.M.C. (1997) Molecular cloning and characterization of WNT14B, a novel member of the WNT gene family. (PubMed id 11604992) 1 , 2 , 7 Kirikoshi H.... Katoh M. (2001) Expression of WNT14 and WNT14B mRNAs in human cancer, up-regulation of WNT14 by IFNgamma and up-regulation of WNT14B by beta-estradiol. (PubMed id 11713592) 1 , 3, 7 Kirikoshi H....Katoh M. (2001) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Maternal genes and facial clefts in offspring: a comp rehensive search for genetic associations in two population-based cleft studies from Scandinavia. (PubMed id 20634891) 1 Jugessur A....Murray J.C. (2010) Genetic variants in COL2A1, COL11A2, and IRF6 contrib ute risk to nonsyndromic cleft palate. (PubMed id 20672350) 1 Nikopensius T....Metspalu A. (2010) Studies with Wnt genes and nonsyndromic cleft lip and palate. (PubMed id 20890934) 1 Menezes R....Vieira A.R. (2010) Reconstitution of a frizzled8.Wnt3a.LRP6 signaling co mplex reveals multiple Wnt and Dkk1 binding sites on LRP6. (PubMed id 20093360) 2 Bourhis E....Hannoush R.N. (2010) Mutational analysis of the WNT gene family in women with Mayer-Rokitansky-Kuster-Hauser syndrome. (PubMed id 19171330) 1 Ravel C....Siffroi J.P. (2009)
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External Searches for WNT9B gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing WNT9B gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing WNT9B gene
(According to HUGE )
About This Section --
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Specialized Databases showing WNT9B gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for WNT9B gene: Search GeneIP for patents involving WNT9B GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor WNT9B gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for WNT9B
ELISAs and CLIAs for WNT9B
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