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Aliases & Descriptionsfor WRAP53 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions WD repeat containing, antisense to TP531 2 WD40 repeat-containing protein encoding RNA antisense to p532 3 TCAB11 2 3 5 WD-encoding RNA antisense to p532 WDR792 3 5 OTTHUMP000001660472 WD repeat domain 791 2 WD40 protein Wrap532 FLJ103851 2 telomerase Cajal body protein 12 WD repeat-containing protein 792 3
Export aliases for WRAP53 gene to outside databases Previous GC identifers: GC17P007534 GC17P007589
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Summariesfor WRAP53 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: WAP53_HUMAN, Q9BUR4 Function : Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for thereplication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage
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Genomic Viewsfor WRAP53 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for WRAP53 Other transcription factors Search SABiosciences Chromatin IP Primers for WRAP53 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for WRAP53
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17p13.1 WRAP53 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P007483: view genomic region
(about GC identifiers )
Start:
7,482,804 bp from pter
End:
7,500,156 bp from pter
Size:
17,353 bases
Orientation:
plus strand
1 alternative location : Chr 17+ 7,589,389-7,606,820
RefSeq DNA sequence: NC_000017.10 NT_010718.16
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Proteinsfor WRAP53 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: WAP53_HUMAN, Q9BUR4 (See
protein sequence )Recommended Name: Telomerase Cajal body protein 1 Size : 548 amino acids; 59309 Da
Subunit : Component of the telomerase holoenzyme complex at least composed of TERT, DKC1, WRAP53/TCAB1, NOP10, NHP2,GAR1, TEP1, EST1A, POT1 and a telomerase RNA template component (TERC)
Subcellular location : Nucleus, Cajal body. Cytoplasm
Secondary accessions : B3KPR9 Q08ET9 Q9NW09Explore the universe of human proteins at neXtProt for WRAP53: NX_Q9BUR4 Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001137462.1 NP_001137463.1 NP_001137464.1 NP_060551.2 ENSEMBL proteins: ENSP00000408862 ENSP00000411061 ENSP00000379727 ENSP00000324203 ENSP00000397219 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
WRAP53 for ontologies About GeneDecksing Antibodies for WRAP53: Assays for WRAP53:
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Protein
Domains/ Familiesfor WRAP53 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
WRAP53 for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry Q9BUR4 ProtoNet protein and cluster: Q9BUR4
UniProtKB/Swiss-Prot: WAP53_HUMAN, Q9BUR4 Similarity : Contains 6 WD repeats
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Gene Functionfor WRAP53 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: WAP53_HUMAN, Q9BUR4 Function : Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for thereplication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage
2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
WRAP53 for ontologies About GeneDecksing
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Pathways & Interactionsfor WRAP53 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for WRAP53 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for WRAP53 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
WRAP53 for ontologies About GeneDecksing
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Drugs & Compoundsfor WRAP53 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for WRAP53
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Transcriptsfor WRAP53 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for WRAP53 gene (4 alternative transcripts): NM_001143990.1 NM_001143991.1 NM_001143992.1 NM_018081.2
Additional cDNA sequence: AK001247.1 AK056669.1 AK092370.1 AK225273.1 AK225411.1 AK303246.1 AY766322.1 AY766323.1 BC002336.2 CR603263.1 CR615409.1 CR616746.1 CR617478.1 CR622832.1 CR624035.1 DQ431240.1 DQ431241.1
14 DOTS entries : DT.40276076 DT.445840 DT.100712946 DT.120961418 DT.100791809 DT.100791797 DT.101967939 DT.100791800
DT.100762063 DT.92432271 DT.100791798 DT.100791802 DT.92469229 DT.97855928 24/201 AceView cDNA sequences (see all 201 ):
BM824406 CB138697 CR624035 CA417092 BQ644183 BM423498 BM552657 AK092370 BM725682 BU849179 CR622832 BM678289 CR615409 BM723308 CR616746 CA487183 CA426678 CR617478 BC002336 BG109721 BM926273 BQ651069 CF264929 CF142453 Unigene Cluster for WRAP53:
WD repeat containing, antisense to TP53 Hs.437460 [show with all ESTs ] Unigene Representative Sequence: AK056669 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for WRAP53 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 SP1 :                             SP2 :               -               SP3 :               -              
About this scheme ECgene alternative splicing isoforms for WRAP53 10 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000451908 ENST00000457584 ENST00000396463 ENST00000498311 (uc002giq.2 )ENST00000463804 ENST00000316024 (uc010vui.1 uc002gip.2 uc002gir.2 uc010cnl.2 )ENST00000431639 (uc010vuh.1 ) ENST00000467699 (uc010vuj.1 ) ENST00000498114 ENST00000471973
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Expression for WRAP53 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section WRAP53 expression in normal and diseased human tissues 1 / 2
5 probe-sets matching WRAP53 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
44563_at2
U95-B
1
1.00
1.00
1.00
1.00
--
--
--
--
--
220258_s_at2
U133-A
1
1.00
1.00
--
--
--
--
--
--
--
44563_at2
U133-A
1
1.00
1.00
--
--
--
--
--
--
--
220258_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
44563_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
WRAP53 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGGGGGAGCA SOURCE GeneReport for Unigene cluster: Hs.437460 UniProtKB/Swiss-Prot: WAP53_HUMAN, Q9BUR4 Tissue specificity : Expressed in all tissues and cell lines examined
SABiosciences Custom PCR Arrays for WRAP53
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Orthologsfor WRAP53 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for WRAP53 gene from 5/12 species (see all 12 )
About this table Species with no ortholog for WRAP53 ENSEMBL Gene Tree for WRAP53 (if available)
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Paralogsfor WRAP53 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor WRAP53 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 17 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for WRAP53 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for WRAP53: --
QIAGEN SeqTarget long-range PCR primers for resequencing WRAP53
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Disorders & Mutationsfor WRAP53 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
WRAP53 for disorders About GeneDecksing
OMIM: 612661 Human Gene Mutation Database (HGMD) : WRAP53 Human Genome Epidemiology (HuGE) Navigator: WRAP53 (0 documents) Export disorders and mutations for WRAP53 gene to outside databases
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Medical Newsfor WRAP53 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor WRAP53 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/27 PubMed articles for WRAP53 gene, integrated from 7 sources (see all 27 ): (articles sorted by number of sources associating them with WRAP53) A human telomerase holoenzyme protein required for Cajal body localization and telomere synthesis. (PubMed id 19179534) 1 , 2 , 3 Venteicher A.S.... Artandi S.E. (2009) Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage. (PubMed id 19250907) 1 , 2 , 3 Mahmoudi S....Farnebo M. (2009) The p53 tumor suppressor: a master regulator of diver se cellular processes and therapeutic target in cancer. (PubMed id 20494116) 1 , 3 Farnebo M....Wiman K.G. (2010) TCAB1: driving telomerase to Cajal bodies. (PubMed id 19342896) 1 , 3 Venteicher A.S. and Artandi S.E. (2009) Wrap53, a novel regulator of p53. (PubMed id 19571673) 1 , 3 Farnebo M. (2009) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 , 2 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Genetic susceptibility to distinct bladder cancer sub phenotypes. (PubMed id 19692168) 1 Guey L.T....Malats N. (2010) The diversity profile of TP53 is influenced by positi ve selection on the immediately upstream locus WDR79. (PubMed id 19797907) 1 Alonso S....de la RA_a C. (2010)
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External Searches for WRAP53 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing WRAP53 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing WRAP53 gene
(According to HUGE )
About This Section --
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Specialized Databases showing WRAP53 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for WRAP53 gene: Search GeneIP for patents involving WRAP53 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor WRAP53 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for WRAP53
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