Aliases &
Descriptions
for YIPF1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| Yip1 domain family, member 11 2 | | DJ167A19.11 2 | | FinGER11 2 | | YIP1 family member 12 3 | | OTTHUMP000000100472 | | protein YIPF12 |
Export aliases for YIPF1 gene to outside databasesPrevious GC identifers: GC01M054030 GC01M054317 |
Summaries
for YIPF1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Gene Wiki entry for YIPF1 |
Genomic Views
for YIPF1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the YIPF1 gene promoter:
Sp1 c-Myb GCNF-1 GCNF-2 ZID RORalpha1 RORalpha2 FOXF2 GATA-3 AREB6
Other transcription factors
Search SABiosciences Chromatin IP Primers for YIPF1
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for YIPF1  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1p33-p32.1 Ensembl cytogenetic band: 1p32.3 HGNC cytogenetic band: 1p33-p32.1YIPF1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M052433: view genomic region
(about GC identifiers)
Start:
|
52,433,095 bp from pter |
End:
|
52,471,166 bp from pter |
Size:
|
38,072 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr1- 54,317,392-54,355,507 |
RefSeq DNA sequence:- NC_000001.10 NT_032977.9
|
Proteins
for YIPF1 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: YIPF1_HUMAN, Q9Y548 (See
protein sequence)Recommended Name: Protein YIPF1 Size: 306 amino acids; 34277 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Sequence caution: Sequence=AAH09674.1; Type=Erroneous initiation;
Secondary accessions: B2RCM7 Q9NWJ1Alternative splicing: 2 isoforms: Q9Y548-1 Q9Y548-2 Explore the universe of human proteins at neXtProt for YIPF1: NX_Q9Y548
REFSEQ proteins: NP_061855.1
ENSEMBL proteins: ENSP00000360452 ENSP00000072644 ENSP00000416507
Human Recombinant Proteins
3 Gene Ontology (GO) cellular component terms (GO ID links to tree view): About this table
YIPF1 for ontologies About GeneDecksing
Antibodies for YIPF1:
Assays for YIPF1: |
Protein
Domains/
Families
for YIPF1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
YIPF1 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9Y548ProtoNet protein and cluster: Q9Y548 UniProtKB/Swiss-Prot: YIPF1_HUMAN, Q9Y548Similarity: Belongs to the YIP1 family |
Gene Function
for YIPF1 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
2 Gene Ontology (GO) molecular function terms (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003723 | RNA binding |
-- | -- | | GO:0004540 | ribonuclease activity |
-- | -- |
About this table
YIPF1 for ontologies About GeneDecksing
|
Pathways & Interactions
for YIPF1 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for YIPF1
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for YIPF1
|
Drugs & Compounds
for YIPF1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for YIPF1
|
Transcripts
for YIPF1 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for YIPF1 gene: NM_018982.4 Additional cDNA sequence: AK000823.1 AK300240.1 AK315183.1 AL713668.1 BC009674.1 BC064590.1 CR595743.1 CR601785.1 CR602343.1 CR612966.1 CR615001.1 CR621847.1 CR623623.1 CR624867.1 13 DOTS entries: DT.92437172 DT.100782964 DT.100782957 DT.100782959 DT.92437173 DT.100782961 DT.121370361 DT.92437176 DT.95126675 DT.95126680 DT.95263009 DT.92437174 DT.99970827 24/190 AceView cDNA sequences (see all 190): AL558899 BM760914 CR624867 CR623623 BM752394 BM760117 CR621847 BM760141 CR602343 BM756401 BG742307 BM474869 BI916236 CR601785 CR615001 CR612966 CB159366 BG387679 BG339043 BM661997 BQ020516 AI271452 BQ941063 BG745504
 highest scoring ESTs for YIPF1:AA354863 AK000823 AL549408 AL551031 AL713668 BC064590 BE789873 BF686451 BF971376 BG338987 Unigene Cluster for YIPF1: Yip1 domain family, member 1 Hs.11923 [show with all ESTs]Unigene Representative Sequence: BC064590
GeneLoc Exon Structure
5/9 Alternative Splicing Database (ASD) splice patterns (SP) for YIPF1 (see all 9)
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11a | · | 11b | · | 11c | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b |
|---|
|
| SP1: | | | | | | | | | - | | | | | | - | | - | | | | | | | | | | | | | | | | | | | | - | | | | | | |
| SP2: | | | | | - | | - | | - | | | | | | - | | - | | | | | | | | | | | | | | | | | | | | - | | | | | | |
| SP3: | | | | | - | | | | - | | | | | | - | | - | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | - | | - | | | | | | | | - | | - | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP5: | | | | | - | | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
About this scheme
ECgene alternative splicing isoforms for YIPF1
8 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000371399 ENST00000480151 ENST00000072644(uc001cvu.2 uc001cvv.2)
ENST00000469457 ENST00000465897 ENST00000412288 ENST00000464950(uc001cvw.2 uc001cvx.2 uc001cvy.2)
ENST00000472983
|
Expression
for YIPF1 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| YIPF1 expression in normal and diseased human tissues
1 / 2 / 3 3 probe-sets matching YIPF1 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 41640_at2, 3
|
U95-A |
1 |
0.69 |
1.00 |
1.00 |
1.00 |
AL031427 |
0.20 |
0.33 |
0.27 |
1 |
| 214733_s_at2, 3
|
U133-A |
1 |
0.64 |
1.00 |
-- |
-- |
AL031427 |
0.20 |
0.33 |
0.27 |
1 |
| 214733_s_at2
|
U133Plus2 |
1 |
0.64 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
YIPF1 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: CTTCACTGTG
SOURCE GeneReport for Unigene cluster: Hs.11923
SABiosciences Custom PCR Arrays for YIPF1
|
Orthologs
for YIPF1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for YIPF1 gene from 5/16 species (see all 16)
About this table Species with no ortholog for YIPF1
ENSEMBL Gene Tree for YIPF1 (if available) |
Paralogs
for YIPF1 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for YIPF1 gene
- YIPF22
YIPF1 for paralogs About GeneDecksing
|
Genomic Variants
for YIPF1 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr 1 pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for YIPF1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 6 variations for YIPF1
2 CNVs: 63759 84246
4 Indels: 84248 84247 84249 74485 | | QIAGEN SeqTarget long-range PCR primers for resequencing YIPF1 |
|
Disorders & Mutations
for YIPF1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Medical News
for YIPF1 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for YIPF1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
10/11 PubMed articles for YIPF1 gene, integrated from 7 sources (see all 11):
(articles sorted by number of sources associating them with YIPF1)- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- The LIFEdb database in 2006. (PubMed id 16381901)1 Mehrle A....Wiemann S. (2006)
- High-content screening microscopy identifies novel proteins with a putative role in secretory membrane traffic. (PubMed id 15466293)1 Starkuviene V....Pepperkok R. (2004)
- From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336)1 Wiemann S....Poustka A. (2004)
- Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)1 Brandenberger R.... Stanton L.W. (2004)
- Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1 Wiemann S.... Poustka A. (2001)
- Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PubMed id 11256614)1 Simpson J.C.... Wiemann S. (2000)
|
External Searches for YIPF1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing YIPF1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing YIPF1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing YIPF1 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for YIPF1 gene:
Search GeneIP for patents involving YIPF1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for YIPF1 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
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 |  |  |  | |
| |  | Search Tocris compounds for YIPF1 |
| |  |  |  |  | | | | |
 | | | ELISAs and CLIAs for YIPF1 |
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