Aliases &
Descriptions
for ZFAND3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| zinc finger, AN1-type domain 31 2 | | FLJ177992 | | TEX272 3 5 | | AN1-type zinc finger protein 32 | | FLJ132221 2 | | OTTHUMP000000163352 | | testis expressed sequence 271 2 | | OTTHUMP000002166892 | | Testis-expressed sequence 272 3 | | OTTHUMP000000163342 |
Export aliases for ZFAND3 gene to outside databasesPrevious GC identifers: GC06P037896 GC06P037787 |
Summaries
for ZFAND3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for ZFAND3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ZFAND3 gene promoter:
AP-2alphaA AP-2gamma POU2F1 MZF-1 MEF-2A Nkx6-1 GATA-1 RSRFC4 Pbx1a c-Rel
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZFAND3
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ZFAND3  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6pter-p22.3 Ensembl cytogenetic band: 6p21.2 HGNC cytogenetic band: 6pter-p22.3ZFAND3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P037507: view genomic region
(about GC identifiers)
Start:
|
37,507,083 bp from pter |
End:
|
38,122,400 bp from pter |
Size:
|
615,318 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000006.11 NT_007592.15
|
Proteins
for ZFAND3 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: ZFAN3_HUMAN, Q9H8U3 (See
protein sequence)Recommended Name: AN1-type zinc finger protein 3 Size: 227 amino acids; 25184 Da
PDB structures from  and Proteopedia  :1X4W (3D)
Secondary accessions: Q5SZZ0 Q5SZZ1Explore the universe of human proteins at neXtProt for ZFAND3: NX_Q9H8U3
Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_068762.1
ENSEMBL proteins: ENSP00000287218 ENSP00000362487 ENSP00000420240 ENSP00000362489
Human Recombinant Proteins
Antibodies for ZFAND3:
Assays for ZFAND3: |
Protein
Domains/
Families
for ZFAND3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZFAND3 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9H8U3ProtoNet protein and cluster: Q9H8U3 2 Blocks protein families: IPB000058 Zn-finger IPB002653 Zn-finger
UniProtKB/Swiss-Prot: ZFAN3_HUMAN, Q9H8U3Similarity: Contains 1 A20-type zinc fingerSimilarity: Contains 1 AN1-type zinc finger |
Gene Function
for ZFAND3 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
3 Gene Ontology (GO) molecular function terms (GO ID links to tree view): About this table
ZFAND3 for ontologies About GeneDecksing
|
Pathways & Interactions
for ZFAND3 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for ZFAND3
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZFAND3
1 Interacting protein for ZFAND3 (Q9H8U32) via UniProtKB, MINT, and/or STRINGAbout this table
|
Drugs & Compounds
for ZFAND3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for ZFAND3
|
Transcripts
for ZFAND3 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for ZFAND3 gene: NM_021943.2 Additional cDNA sequence: AK023284.1 AK310757.1 AL137302.1 BC031481.2 CR600723.1 CR617176.1 13 DOTS entries: DT.95192871 DT.448167 DT.100793832 DT.86841488 DT.100793831 DT.91691331 DT.100793835 DT.121380405 DT.121380479 DT.92414487 DT.95192884 DT.455566 DT.92434806 24/328 AceView cDNA sequences (see all 328): BM977605 BM142117 AW468237 AI873740 AA252573 CA442816 BC031481 AI627694 BM142164 BQ109387 AI568926 BQ014509 AI085663 BX281559 AI249251 AI056510 BM838794 BM976162 BM846494 AI129174 CR600723 BI793177 AI632718 AW068381
 highest scoring ESTs for ZFAND3:W80407 AA024686 AA024785 AA031828 AA115155 AA115156 AA150903 AA150934 AA251597 AA255687 Unigene Cluster for ZFAND3: Zinc finger, AN1-type domain 3 Hs.36959 [show with all ESTs]Unigene Representative Sequence: NM_021943
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for ZFAND3 (see all 8)
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10a | · | 10b | · | 10c | · | 10d | · | 10e |
|---|
|
| SP1: | | | - | | | | | | - | | - | | | | | | - | | | | - | | - | | | | | | | | | | | | |
| SP2: | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | - | | - | | | | | | - | | - | | - | | - | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | - | | | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | - | | - | | | | - | | - | | | | | | | | | | | |
About this scheme
ECgene alternative splicing isoforms for ZFAND3
7 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000287218(uc003onx.2) ENST00000469208 ENST00000440482 ENST00000373389
ENST00000463847 ENST00000474522 ENST00000373391
|
Expression
for ZFAND3 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| ZFAND3 expression in normal and diseased human tissues
1 / 2 / 3 7 probe-sets matching ZFAND3 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 58339_at2, 3
|
U95-B |
1 |
1.00 |
1.00 |
0.94 |
0.85 |
R52747 |
0.60 |
1.00 |
0.82 |
1 |
| 46210_at2, 3
|
U95-B |
1 |
0.88 |
1.00 |
0.91 |
1.33 |
W80407 |
1.00 |
1.00 |
1.00 |
1 |
| 70113_at*2, 3
|
U95-D |
1 |
-- |
-- |
0.06 |
0.83 |
AI817165 |
0.20 |
0.50 |
0.38 |
1 |
| 222493_s_at2, 3
|
U133-B |
1 |
1.00 |
1.00 |
-- |
-- |
AW303359 |
0.80 |
1.00 |
0.91 |
1 |
| 218020_s_at2, 3
|
U133-A |
1 |
0.91 |
1.00 |
-- |
-- |
NM_021943 |
0.60 |
1.00 |
0.82 |
1 |
| 222493_s_at2
|
U133Plus2 |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 218020_s_at2
|
U133Plus2 |
1 |
0.91 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
ZFAND3 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: TTCGCTTCCT
SOURCE GeneReport for Unigene cluster: Hs.36959
SABiosciences Custom PCR Arrays for ZFAND3
|
Orthologs
for ZFAND3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ZFAND3 gene from 5/9 species (see all 9)
About this table Species with no ortholog for ZFAND3
ENSEMBL Gene Tree for ZFAND3 (if available) |
Paralogs
for ZFAND3 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
Genomic Variants
for ZFAND3 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr 6 pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for ZFAND3 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 9 variations for ZFAND3
6 CNVs: 81377 8513 93684 93681 93686 64487
3 Indels: 93683 93685 93682 | | QIAGEN SeqTarget long-range PCR primers for resequencing ZFAND3 |
|
Disorders & Mutations
for ZFAND3 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZFAND3 for disorders About GeneDecksing
OMIM: 607455
Human Genome Epidemiology (HuGE) Navigator: ZFAND3 (1 document)
Export disorders and mutations for ZFAND3 gene to outside databases
|
Medical News
for ZFAND3 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for ZFAND3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
10 PubMed articles for ZFAND3 gene integrated from 7 sources:
(articles sorted by number of sources associating them with ZFAND3)- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070)1 Stelzl U.... Wanker E.E. (2005)
- Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Tex27, a gene containing a zinc-finger domain, is up-regulated during the haploid stages of spermatogenesis. (PubMed id 10366431)1 de Luis O....del Mazo J. (1999)
- Characterization of genes expressed early in mouse spermatogenesis, isolated from a subtractive cDNA library. (PubMed id 8703127)1 Lopez-Fernandez L.A. and del Mazo J. (1996)
- Isolation of novel and known genes from a human fetal cochlear cDNA library using subtractive hybridization and differential screening. (PubMed id 7829101)1 Robertson N.G....Morton C.C. (1994)
|
External Searches for ZFAND3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ZFAND3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZFAND3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZFAND3 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for ZFAND3 gene:
Search GeneIP for patents involving ZFAND3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZFAND3 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
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| |  | Search Tocris compounds for ZFAND3 |
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