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Aliases & Descriptionsfor ZNF395 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions zinc finger protein 3951 2 HDRF-22 3 PBF1 2 3 HD gene regulatory region-binding protein 22 3 PRF-11 2 3 HD-regulating factor 22 3 HDBP21 2 3 HDBP-22 3 DKFZp434K12101 2 PRF12 Papillomavirus regulatory factor 12 3 papillomavirus regulatory factor PRF-12 Papillomavirus-binding factor2 3 Huntington's disease gene regulatory region-binding protein 22 Huntington disease gene regulatory region-binding protein 22 3 Si-1-8-142
Export aliases for ZNF395 gene to outside databases Previous GC identifers: GC08M028228 GC08M028260 GC08M028261
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Summariesfor ZNF395 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: ZN395_HUMAN, Q9H8N7 Function : Plays a role in papillomavirus genes transcription
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Genomic Viewsfor ZNF395 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ZNF395 gene promoter: FOXD1 Bach1 GATA-3 GATA-2 GATA-1 Arnt c-Myc Max FOXF2 FOXO1a Other transcription factors Search SABiosciences Chromatin IP Primers for ZNF395 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ZNF395
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8p21.1 Ensembl cytogenetic band: 8p21.1 HGNC cytogenetic band: 8p21 ZNF395 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M026748: view genomic region
(about GC identifiers )
Start:
26,748,397 bp from pter
End:
26,789,214 bp from pter
Size:
40,818 bases
Orientation:
minus strand
1 alternative location : Chr 8- 28,203,102-28,260,218
RefSeq DNA sequence: NC_000008.10 NT_167187.1
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Proteinsfor ZNF395 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: ZN395_HUMAN, Q9H8N7 (See
protein sequence )Recommended Name: Zinc finger protein 395 Size : 513 amino acids; 54939 Da
Subunit : Interacts with repression-mediating E2 binding site P2 of human papillomavirus type 8 (HPV8)
Subcellular location : Cytoplasm. Nucleus. Note=May shuttle between nucleus and cytoplasm
Secondary accessions : B3KUY7 Q6F6H2 Q9BY72 Q9NPB2 Q9NS57 Q9NS58 Q9NS59Explore the universe of human proteins at neXtProt for ZNF395: NX_Q9H8N7 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_061130.1 ENSEMBL proteins: ENSP00000429640 ENSP00000427812 ENSP00000340494 ENSP00000427719 ENSP00000429649 ENSP00000429823 ENSP00000430203 ENSP00000427934 ENSP00000428452 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
ZNF395 for ontologies About GeneDecksing Antibodies for ZNF395: Assays for ZNF395:
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Protein
Domains/ Familiesfor ZNF395 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ZNF395 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9H8N7 ProtoNet protein and cluster: Q9H8N7
UniProtKB/Swiss-Prot: ZN395_HUMAN, Q9H8N7 Similarity : Contains 1 C2H2-type zinc finger
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Gene Functionfor ZNF395 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: ZN395_HUMAN, Q9H8N7 Function : Plays a role in papillomavirus genes transcription
3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
ZNF395 for ontologies About GeneDecksing
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Pathways & Interactionsfor ZNF395 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for ZNF395 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF395 1 Interacting protein for ZNF395 (Q9H8N7 2 ) via UniProtKB, MINT, and/or STRING About this table 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
IC 14625278
About this table
ZNF395 for ontologies About GeneDecksing
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Drugs & Compoundsfor ZNF395 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for ZNF395
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Transcriptsfor ZNF395 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for ZNF395 gene: NM_018660.2
Additional cDNA sequence: AB044751.1
17 DOTS entries : DT.75114880 DT.100676285 DT.100787299 DT.100787298 DT.104415 DT.91684182 DT.100787301 DT.92429976
DT.120631094 DT.92067568 DT.100787307 DT.95153078 DT.100708637 DT.120631097 DT.92429973 DT.100787309 DT.95124304 24/401 AceView cDNA sequences (see all 401 ):
BP374773 AA347918 AI057234 BU729352 BE615116 AA972138 BM452092 BF445501 AA122378 BQ030068 AI361169 Z39516 AL527398 AI333169 AF263928 AA701339 BU580646 AI335635 AK002050 AL526737 BC001237 AI700223 BE255923 R63270
highest scoring ESTs for ZNF395 :AB057659 AK002050 AK023418 AL039400 AU137938 AU279892 N25612 N36098 N44101 AA347917 Unigene Clusters for ZNF395:
Zinc finger protein 395 Hs.435535 [show with all ESTs ] , Hs.695998 Unigene Representative Sequences: NM_018660 , BP231545 GeneLoc Exon Structure 5/21 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF395 (see all 21 ) ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · SP1 :     -                                                 SP2 :     -     -                                             SP3 :                                       -   -   -   -   -   -   -   SP4 :                                                     SP5 :                                       -   -   -   -     -    
ExUns: 18b ^ 19a · 19b · 19c · 19d · 19e ^ 20a · 20b ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26a · 26b ^ 27 ^ 28a · 28b SP1 :                                     SP2 :                                     SP3 :                                     SP4 :                                     SP5 :                                    
About this scheme ECgene alternative splicing isoforms for ZNF395 11 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000523202 ENST00000521185 ENST00000344423 (uc003xgq.2 uc003xgr.2 uc003xgs.2 uc003xgt.2 )ENST00000520535 ENST00000519730 ENST00000517459 ENST00000522795 ENST00000517372 ENST00000520290 ENST00000521912 ENST00000523095
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Expression for ZNF395 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section ZNF395 expression in normal and diseased human tissues 1 / 2 / 3
16 probe-sets matching ZNF395 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
51543_at2 , 3
U95-B
1
1.00
1.00
0.77
0.99
N36098
0.80
0.88
0.84
1
64071_at2 , 3
U95-C
1
1.00
1.00
0.63
0.95
N25612
0.80
0.88
0.84
1
44682_at2 , 3
U95-B
1
0.94
1.00
0.66
1.45
AL039400
0.80
0.88
0.84
1
78133_at2 , 3
U95-E
1
0.88
1.00
0.50
0.64
N44101
0.60
1.00
0.82
1
218149_s_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_017606
0.20
1.00
0.72
1
221123_x_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_018660
0.60
0.83
0.73
1
223216_x_at2 , 3
U133-B
1
1.00
1.00
--
--
BC001237
0.60
0.83
0.73
1
232693_s_at2 , 3
U133-B
1
1.00
1.00
--
--
AK021850
0.40
0.75
0.60
1
222536_s_at2 , 3
U133-B
1
1.00
1.00
--
--
N36098
0.80
0.88
0.84
1
232694_at2 , 3
U133-B
1
0.36
1.00
--
--
AK021850
0.40
0.75
0.60
1
218149_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
221123_x_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
223216_x_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
232693_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
222536_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
232694_at2
U133Plus2
1
0.36
1.00
--
--
--
--
--
--
--
About this table
ZNF395 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCCACGTTGT GCGAGTGTCC SOURCE GeneReport for Unigene clusters: Hs.435535 Hs.695998 UniProtKB/Swiss-Prot: ZN395_HUMAN, Q9H8N7 Tissue specificity : Widely expressed
SABiosciences Custom PCR Arrays for ZNF395
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Orthologsfor ZNF395 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for ZNF395 gene from 5/10 species (see all 10 )
About this table Species with no ortholog for ZNF395 ENSEMBL Gene Tree for ZNF395 (if available)
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Paralogsfor ZNF395 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for ZNF395 gene ZNF704 2 SLC2A4RG 2
ZNF395 for paralogs About GeneDecksing
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Genomic Variantsfor ZNF395 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 8 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for ZNF395 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ZNF395: --
QIAGEN SeqTarget long-range PCR primers for resequencing ZNF395
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Disorders & Mutationsfor ZNF395 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ZNF395 for disorders About GeneDecksing
OMIM: 609494 1 Novoseek disease relationship for ZNF395 gene
About this table Export disorders and mutations for ZNF395 gene to outside databases
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Medical Newsfor ZNF395 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor ZNF395 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/15 PubMed articles for ZNF395 gene, integrated from 7 sources (see all 15 ): (articles sorted by number of sources associating them with ZNF395) Novel nuclear shuttle proteins, HDBP1 and HDBP2, bind to neuronal cell-specific cis-regulatory element in the promoter for the human Huntington's disease gene. (PubMed id 14625278) 1 , 2 , 3, 7 Tanaka K.... Ikeda J.-E. (2004) A new cellular factor recognizes E2 binding sites of papillomaviruses which mediate transcriptional repression by E2. (PubMed id 11853404) 1 , 2 , 7 Boeckle S.... Steger G. (2002) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Scythe/BAT3 regulates apoptotic cell death induced by papillomavirus binding factor in human osteosarcoma. (PubMed id 19018758) 1 , 7 Tsukahara T....Sato N. (2009) Papillomavirus binding factor binds to SAP30 and represses transcription via recruitment of the HDAC1 co-repressor complex. (PubMed id 17897615) 1 , 7 Sichtig N....Steger G. (2007) Identification of human autologous cytotoxic T-lymphocyte-defined osteosarcoma gene that encodes a transcriptional regulator, papillomavirus binding factor. (PubMed id 15289353) 1 , 7 Tsukahara T....Sato N. (2004) Papillomavirus binding factor (PBF)-mediated inhibition of cell growth is regulated by 14-3-3beta. (PubMed id 17531190) 1 , 7 Sichtig N....Steger G. (2007) Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332) 2 Mayya V.... Han D.K. (2009) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for ZNF395 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ZNF395 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ZNF395 gene
(According to HUGE )
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About This Section Patent Information for ZNF395 gene: Search GeneIP for patents involving ZNF395 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ZNF395 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for ZNF395
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