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Aliases & Descriptionsfor ZP1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions zona pellucida glycoprotein 1 (sperm receptor)1 2 zona pellucida sperm-binding protein 12 MGC876932 Zona pellucida glycoprotein 13 zp-12 Zp-13 zona pellucida protein 12
Export aliases for ZP1 gene to outside databases Previous GC identifers: GC11U990202 GC11P060393 GC11P060635
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Summariesfor ZP1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: ZP1_HUMAN, P60852 Function : The mammalian zona pellucida, which mediates species-specific sperm binding, induction of the acrosomereaction and prevents post-fertilization polyspermy, is composed of three to four glycoproteins, ZP1, ZP2, ZP3, and ZP4. ZP1 ensures the structural integrity of the zona pellucida
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Genomic Viewsfor ZP1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ZP1 gene promoter: AP-1 c-Jun NF-kappaB c-Fos NF-kappaB1 GATA-3 GATA-2 GATA-1 RFX1 c-Myc Other transcription factors Search SABiosciences Chromatin IP Primers for ZP1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11q12.2 Ensembl cytogenetic band: 11q12.2 HGNC cytogenetic band: 11q12.2 ZP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P056981: view genomic region
(about GC identifiers )
Start:
56,981,172 bp from pter
End:
56,989,320 bp from pter
Size:
8,149 bases
Orientation:
plus strand
1 alternative location : Chr 11+ 60,635,015-60,643,164
RefSeq DNA sequence: NC_000011.9 NT_167190.1
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Proteinsfor ZP1 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: ZP1_HUMAN, P60852 (See
protein sequence )Recommended Name: Zona pellucida sperm-binding protein 1 precursor Size : 638 amino acids; 70049 Da
Subunit : Polymers of ZP2 and ZP3 organized into long filaments cross-linked by ZP1 homodimers (By similarity)
Subcellular location : Processed zona pellucida sperm-binding protein 1: Secreted, extracellular space, extracellularmatrix
Subcellular location : Cell membrane; Single-pass type I membrane proteinExplore the universe of human proteins at neXtProt for ZP1: NX_P60852 Post-translational modifications:
Proteolytically cleaved before the transmembrane segment to yield the secreted ectodomain incorporated in the zona pellucida1
O-glycosylated (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_997224.2 ENSEMBL proteins: ENSP00000278853 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
ZP1 for ontologies About GeneDecksing Antibodies for ZP1: Assays for ZP1:
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Protein
Domains/ Familiesfor ZP1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ZP1 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P60852 ProtoNet protein and cluster: P60852
1 Blocks protein family : IPB000519 P-type trefoil domain UniProtKB/Swiss-Prot: ZP1_HUMAN, P60852 Domain : The ZP domain is involved in the polymerization of the ZP proteins to form the zona pellucidaSimilarity : Belongs to the ZP domain family. ZPB subfamilySimilarity : Contains 1 P-type (trefoil) domainSimilarity : Contains 1 ZP domain
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Gene Functionfor ZP1 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: ZP1_HUMAN, P60852 Function : The mammalian zona pellucida, which mediates species-specific sperm binding, induction of the acrosomereaction and prevents post-fertilization polyspermy, is composed of three to four glycoproteins, ZP1, ZP2, ZP3, and ZP4. ZP1 ensures the structural integrity of the zona pellucida
Genatlas biochemistry entry for ZP1 :zona pellucida glycoprotein 1,sperm receptor,ortholog of the mouse Zp1 gene Animal Models: 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Zp1) :
ZP1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor ZP1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for ZP1 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZP1 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007338 single fertilization
IEA --
About this table
ZP1 for ontologies About GeneDecksing
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Drugs & Compoundsfor ZP1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for ZP1
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Transcriptsfor ZP1 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for ZP1 gene: NM_207341.2
Additional cDNA sequence: BC067899.1
2 DOTS entries : DT.204486 DT.120716059
highest scoring ESTs for ZP1 :AA890119 AA426398 AI208352 AI698605 AI766401 BC067899 BI561874 BM563794 CR741030 DA092632 Unigene Cluster for ZP1:
Zona pellucida glycoprotein 1 (sperm receptor) Hs.172130 [show with all ESTs ] Unigene Representative Sequence: NM_207341 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for ZP1 ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 SP1 :       -                       SP2 :                             SP3 :       -   -   -                   SP4 :                            
About this scheme ECgene alternative splicing isoforms for ZP1 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000278853 (uc001nqd.2 uc001nqe.2 )
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Expression for ZP1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section ZP1 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching ZP1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
59517_at2 , 3
U95-B
1
0.62
1.00
1.00
1.00
AA890119
0.60
1.00
0.82
1
237335_at2 , 3
U133-B
1
0.91
1.00
--
--
AA890119
0.60
1.00
0.82
1
237335_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
About this table
ZP1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAGCACTGGC SOURCE GeneReport for Unigene cluster: Hs.172130 UniProtKB/Swiss-Prot: ZP1_HUMAN, P60852 Tissue specificity : Oocytes
SABiosciences Custom PCR Arrays for ZP1
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Orthologsfor ZP1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for ZP1 gene from 4 species
About this table Species with no ortholog for ZP1 ENSEMBL Gene Tree for ZP1 (if available)
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Paralogsfor ZP1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for ZP1 gene ZP4 2 ZP2 2
ZP1 for paralogs About GeneDecksing
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Genomic Variantsfor ZP1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 11 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for ZP1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ZP1: --
QIAGEN SeqTarget long-range PCR primers for resequencing ZP1
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Disorders & Mutationsfor ZP1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ZP1 for disorders About GeneDecksing
OMIM: 195000 Genetic Association Database (GAD): ZP1 Human Genome Epidemiology (HuGE) Navigator: ZP1 (9 documents) Export disorders and mutations for ZP1 gene to outside databases
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Medical Newsfor ZP1 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor ZP1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/30 PubMed articles for ZP1 gene, integrated from 7 sources (see all 30 ): (articles sorted by number of sources associating them with ZP1) Identification of the true human orthologue of the mouse Zp1 gene: evidence for greater complexity in the mammalian zona pellucida? (PubMed id 10542331) 1 , 2 , 3, 7 Hughes D.C. and Barratt C.L. (1999) Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811) 1 , 2 Taylor T.D....Sakaki Y. (2006) Association between sequence variations in genes encoding human zona pellucida glycoproteins and fertilization failure in IVF. (PubMed id 15860499) 1 , 4 Mannikko M....Lakkakorpi J.T. (2005) Mutations within the protein Z-dependent protease inhibitor gene are associated with venous thromboembolic disease: a new form of thrombophilia. (PubMed id 15461625) 1 , 4 Van de Water N....Harper P. (2004) Detection of zona pellucida proteins during human folliculogenesis. (PubMed id 18033806) 1 , 7 Gook D.A....Martic M. (2008) Four zona pellucida glycoproteins are expressed in the human. (PubMed id 15142998) 1 , 7 Lefievre L....Barratt C.L. (2004) Study of 18 functional hemostatic polymorphisms in mu cocutaneous bleeding disorders. (PubMed id 20532885) 1 AntA^n A.I....Mezzano D. (2010) Polymorphisms in innate immunity genes and risk of ch ildhood leukemia. (PubMed id 20438785) 1 Han S....Kang D. (2010) In humans, zona pellucida glycoprotein-1 binds to spe rmatozoa and induces acrosomal exocytosis. (PubMed id 20504872) 1 Ganguly A....Gupta S.K. (2010) Risk of meningioma and common variation in genes rela ted to innate immunity. (PubMed id 20406964) 1 Rajaraman P....Inskip P.D. (2010)
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External Searches for ZP1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ZP1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ZP1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing ZP1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for ZP1 gene: Search GeneIP for patents involving ZP1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ZP1 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for ZP1
ELISAs and CLIAs for ZP1
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