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ZPBP2 Gene

protein-coding GIFtS: 47

GC17P033818

zona pellucida binding protein 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases & Descriptions
zona pellucida binding protein 2¹ ²
ZPBPL¹ ² ³ ⁵
MGC41930¹ ²
ZPBP-like protein² ³
zona pellucida binding protein-like²
zona pellucida-binding protein 2²

External Ids:	HGNC: 20678¹	Entrez Gene: 124626²	Ensembl: ENSG00000186075⁷	UniProtKB: Q6X784³

Export aliases for ZPBP2 gene to outside databases

Previous GC identifers: GC17P038399 GC17P035277 GC17P038024

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZPBP2_HUMAN, Q6X784

Function: May be implicated in gamete interaction during fertilization

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the ZPBP2 gene promoter:
         Cdc5   GATA-1   LUN-1   RSRFC4   AP-4   ISGF-3   USF1   AhR   Lmo2   MEF-2A
         Other transcription factors

Search SABiosciences Chromatin IP Primers for ZPBP2

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ZPBP2

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q12 Ensembl cytogenetic band: 17q12 HGNC cytogenetic band: 17q21.1

ZPBP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZPBP2 gene location

GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure

GeneLoc location for GC17P033818: view genomic region (about GC identifiers)

Start:	33,818,468 bp from pter
End:	33,828,162 bp from pter
Size:	9,695 bases
Orientation:	plus strand

1 alternative location:

Chr17+ 38,024,469-38,034,149

RefSeq DNA sequence:

NC_000017.10 NT_010783.15

(According to ¹UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: ZPBP2_HUMAN, Q6X784 (See protein sequence)

Recommended Name: Zona pellucida-binding protein 2 precursor

Size: 338 amino acids; 38652 Da

Subcellular location: Secreted (Potential)

Secondary accessions: A8K8L8 Q6X783 Q86XL5

Alternative splicing: 2 isoforms: Q6X784-1 Q6X784-2

Explore the universe of human proteins at neXtProt for ZPBP2: NX_Q6X784

REFSEQ proteins (2 alternative transcripts):

NP_942141.2 NP_955353.1

ENSEMBL proteins:

ENSP00000335384 ENSP00000367174

Human Recombinant Proteins

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1 Gene Ontology (GO) cellular component term (GO ID links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	IEA	--

About this table

ZPBP2 for ontologies About GeneDecksing

Antibodies for ZPBP2:

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	Uscn ELISAs and CLIAs for ZPBP2

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ZPBP2 for domains About GeneDecksing

3 InterPro domains/families:

IPR010857 Sp38-bd

IPR013783 Ig-like_fold

IPR007110 Ig-like

Graphical View of Domain Structure for InterPro Entry Q6X784

ProtoNet protein and cluster: Q6X784

1 Blocks protein family: IPB010857 Zona-pellucida-binding

UniProtKB/Swiss-Prot: ZPBP2_HUMAN, Q6X784

Similarity: Belongs to the zona pellucida-binding protein Sp38 family

(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: ZPBP2_HUMAN, Q6X784

Function: May be implicated in gamete interaction during fertilization

Inhib. RNA:		Browse for Gene Knock-down Tools from Millipore
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miRNA:		Sigma-Aldrich microRNA Mimics for ZPBP2 Browse microRNA target validation systems at Sigma-Aldrich
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of ZPBP2
		7 SABiosciences Assays for microRNAs that regulate ZPBP2:
		hsa-miR-30c hsa-miR-659 hsa-miR-30a hsa-miR-561 hsa-miR-30b hsa-miR-30d hsa-miR-30e

Gene
Editing:

Browse CompoZr Knockout ZFN at Sigma-Aldrich

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Cell
Lines:

GenScript Custom overexpressing Cell Line Services for ZPBP2

Animal Models: 2 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Zpbp2):

endocrine/exocrine gland

reproductive system

ZPBP2 for phenotypes About GeneDecksing

(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section

SABiosciences Custom Pathway-Focused PCR Arrays for ZPBP2

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for ZPBP2

1 Gene Ontology (GO) biological process term (GO ID links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007339	binding of sperm to zona pellucida	IEA	--

About this table

ZPBP2 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse Small Molecules at Sigma-Aldrich

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for ZPBP2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib. RNA:		Browse for Gene Knock-down Tools from Millipore
		Browse Nano Scale siRNA at Sigma-Aldrich Sigma-Aldrich esiRNA and siRNA for ZPBP2 Sigma-Aldrich shRNA for ZPBP2
		OriGene 29mer shRNA kits in GFP-retroviral vector (see all 3): ZPBP2 OriGene shRNA RFP (see all 3): ZPBP2 OriGene basic RS shRNA (see all 3): ZPBP2 OriGene siRNA (see all 3): ZPBP2
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of ZPBP2

miRNA:		Sigma-Aldrich microRNA Mimics for ZPBP2 Browse microRNA target validation systems at Sigma-Aldrich
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of ZPBP2
		7 SABiosciences Assays for microRNAs that regulate ZPBP2:
		hsa-miR-30c hsa-miR-659 hsa-miR-30a hsa-miR-561 hsa-miR-30b hsa-miR-30d hsa-miR-30e

Clones:		Browse FLAG tag genes at Sigma-Aldrich
		OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): ZPBP2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): ZPBP2 OriGene untagged cDNA clones in CMV expression vector (see all 3): ZPBP2 Browse 3'-UTR reporter clones for miRNA target validation Browse OriGene MicroRNA Expression Plasmids
		GenScript Custom cDNA clone Services for ZPBP2

Primers:		OriGene genome-wide validated SYBR primer pairs: ZPBP2 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay for ZPBP2: PPH17939A

REFSEQ mRNAs for ZPBP2 gene (2 alternative transcripts):

NM_198844.2 NM_199321.2

Additional cDNA sequence:

AK292383.1 AY251603.1 AY251604.1 BC043152.2

3 DOTS entries:

DT.102821029 DT.111469 DT.100748342

24/47 AceView cDNA sequences (see all 47):

NM_198844 NM_199321 BU570505 BC043152 AA993353 AA917527 AA383678 AY251603

AY251604 AW172596 AA971057 AI218027 AW172510 AI024857 AA383045 AA923754

BU852267 BI829458 AI799048 AI240624 BI830195 AW628901 AI964005 AI220227

highest scoring ESTs for ZPBP2:

AI743536 AA758975 AA868677 AA917527 AA923754 AA983779 AA993353 AI017066 AI018549 AI018552

Unigene Cluster for ZPBP2:

Zona pellucida binding protein 2

Hs.367245 [show with all ESTs]

Unigene Representative Sequence: NM_199321

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for ZPBP2

ExUns:	1	^	2	^	3	^	4	^	5	^	6	^	7	^	8a	·	8b
SP1:
SP2:			-
SP3:			-		-		-

About this scheme

ECgene alternative splicing isoforms for ZPBP2
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000348931 ENST00000377940(uc002hte.2 uc002htf.2)

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

ZPBP2 expression in normal and diseased human tissues

¹ / ² / ³

3 probe-sets matching ZPBP2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
89938_at²^{, 3}	U95-E	1	0.88	1.00	1.00	1.00	AI743536	1.00	1.00	1.00	1
231442_at²^{, 3}	U133-B	1	1.00	1.00	--	--	AI743536	1.00	1.00	1.00	1
231442_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

ZPBP2 for expression About GeneDecksing

Data from Genenote (Publications) and GNF BioGPS
About these images

ZPBP2 gene electronic northern expression

About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.367245

Primers:		OriGene genome-wide validated SYBR primer pairs: ZPBP2 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay for ZPBP2: PPH17939A

SABiosciences Custom PCR Arrays for ZPBP2

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for ZPBP2 gene from 5/6 species (see all 6)

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	ZPBP2¹	--	zona pellucida binding protein 2	87.69(n) 81.23(a)	480531 XM_537652.2 XP_537652.2
chimpanzee (Pan troglodytes)	ZPBP2¹	--	zona pellucida binding protein 2	99.07(n) 97.52(a)	454638 XM_511463.2 XP_511463.2
cow (Bos taurus)	ZPBP2¹	--	zona pellucida binding protein 2	83.83(n) 73.13(a)	514334 NM_001075661.1 NP_001069129.1
rat (Rattus norvegicus)	Zpbp2¹	--	zona pellucida binding protein 2	79.55(n) 73.31(a)	363676 NM_001007011.1 NP_001007012.1
mouse (Mus musculus)	Zpbp2^{1 , 5}	11 (61.97 cM)⁵	zona pellucida binding protein 2^{1, 5}	79.65(n)¹ 72.7(a)¹	69376¹ NM_027061.1¹ NP_081337.1¹ AK006058⁵ AK137467⁵ (see all 11)

About this table Species with no ortholog for ZPBP2

ENSEMBL Gene Tree for ZPBP2 (if available)

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for ZPBP2 gene

ZPBP²

ZPBP2 for paralogs About GeneDecksing

(SNPs according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

SNP ID	Valid	Chr 17 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
Genomic Data				Transcription Related Data				Allele Frequencies
			--	--	--		--	--
rs1453560^1,2	C,F,A,	38023441(-)	`AGCAAA/CCTTTG`	2	--	ng5¹		15		MN NS EA NA WA	1036
rs4622539^1,2	C,A,	38023031(-)	`gaaaaT/Attgca`	2	--	ng5¹ tfbs³		5		WA NA	58
rs4795397^1,2	C,F,A,	38023745(+)	`GGCCAA/GTCGGG`	2	--	ng5¹		13		NA NS EA WA	570
rs7218216^1,2	C,F,	38034433(+)	`tctgaT/Ggttga`	2	--	ng3¹		1		WA	50
rs8071135^1,2	C,	38030712(+)	`tttttA/Gagatg`	2	--	int¹		0	--	--	--	--
rs8073948^1,2	C,F,A,	38033796(+)	`tgcagT/Actcat`	2	--	ut3¹ ese³		11		NS EA NA WA	590
rs9891174^1,2	C,F,A,H,	38031802(+)	`AAAAAT/AATATA`	2	--	int¹		7		NA EA WA	220
rs9892108^1,2	C,F,	38032137(+)	`gccCCC/Tttttt`	2	--	int¹ trp³		2		NA WA	74
rs9896961^1,2	H	38030613(+)	`ATAATG/CAACGC`	2	--	int¹		4		NS EA	390
rs9897847^1,2	--	38025038(+)	`ACAGCA/GATCCC`	2	--	int¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for ZPBP2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ZPBP2: --

QIAGEN SeqTarget long-range PCR primers for resequencing ZPBP2

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section

ZPBP2 for disorders About GeneDecksing

OMIM: 608499

Human Gene Mutation Database (HGMD): ZPBP2
Human Genome Epidemiology (HuGE) Navigator: ZPBP2 (1 document)

Export disorders and mutations for ZPBP2 gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶UniProtKB/TrEMBL, and/or ⁷Novoseek)
About This Section

9 PubMed articles for ZPBP2 gene integrated from 7 sources:
(articles sorted by number of sources associating them with ZPBP2)

Identification and characterization of human ZPBP-like gene in silico. (PubMed id 12883658)^{1, 2, 7} Katoh M. and Katoh M. (2003)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Genome-wide meta-analyses identify three loci associa ted with primary biliary cirrhosis. (PubMed id 20639880)¹ Liu X....Seldin M.F. (2010)
Allele-specific chromatin remodeling in the ZPBP2/GSD MB/ORMDL3 locus associated with the risk of asthma and autoimmune disease. (PubMed id 19732864)¹ Verlaan D.J....Naumova A.K. (2009)
Loss of zona pellucida binding proteins in the acrosomal matrix disrupts acrosome biogenesis and sperm morphogenesis. (PubMed id 17664285)¹ Lin Y.N....Matzuk M.M. (2007)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)² Ota T.... Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )² Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 124626	HGNC: 20678	AceView: ZPBP2	Ensembl:ENSG00000186075	euGenes: HUgn124626
ECgene: ZPBP2	H-InvDB: ZPBP2

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Intellectual Property for ZPBP2 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from XenneX, Inc.)

About This Section

Patent Information for ZPBP2 gene:
Search GeneIP for patents involving ZPBP2

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
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	Regulatory tfbs in ZPBP2 promoter
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ZPBP2 gene at Home site.

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ZPBP2 Gene

protein-coding GIFtS: 47

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for ZPBP2 gene

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Proteins
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Drugs & Compounds
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Transcripts
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Expression
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Orthologs
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Export list of displayed genes

ZPBP2 Gene

protein-coding GIFtS: 47

Aliases & Descriptionsfor ZPBP2 gene

Summariesfor ZPBP2 gene

Genomic Viewsfor ZPBP2 gene

Proteinsfor ZPBP2 gene

Protein Domains/Familiesfor ZPBP2 gene

Gene Functionfor ZPBP2 gene

Pathways & Interactionsfor ZPBP2 gene

Drugs & Compoundsfor ZPBP2 gene

Transcriptsfor ZPBP2 gene

Expression for ZPBP2 gene

Orthologsfor ZPBP2 gene

Paralogsfor ZPBP2 gene

Genomic Variantsfor ZPBP2 gene

Disorders & Mutationsfor ZPBP2 gene

Medical Newsfor ZPBP2 gene

Publicationsfor ZPBP2 gene

External Searches for ZPBP2 gene

Genome Databases showing ZPBP2 gene

Other Databases showing ZPBP2 gene

Specialized Databases showing ZPBP2 gene

Intellectual Propertyfor ZPBP2 gene

Productsfor ZPBP2 gene

View Random Gene

Aliases &
Descriptions
for ZPBP2 gene

Summaries
for ZPBP2 gene

Genomic Views
for ZPBP2 gene

Proteins
for ZPBP2 gene

Protein Domains/
Families
for ZPBP2 gene

Gene Function
for ZPBP2 gene

Pathways & Interactions
for ZPBP2 gene

Drugs & Compounds
for ZPBP2 gene

Transcripts
for ZPBP2 gene

Expression
for ZPBP2 gene

Orthologs
for ZPBP2 gene

Paralogs
for ZPBP2 gene

Genomic Variants
for ZPBP2 gene

Disorders & Mutations
for ZPBP2 gene

Medical News
for ZPBP2 gene

Publications
for ZPBP2 gene

Intellectual Property
for ZPBP2 gene

Products
for ZPBP2 gene